GT5_ORYSJ
ID GT5_ORYSJ Reviewed; 449 AA.
AC C7J0P3; A0A0P0VXC2; Q10MK0;
DT 14-OCT-2015, integrated into UniProtKB/Swiss-Prot.
DT 13-OCT-2009, sequence version 1.
DT 03-AUG-2022, entry version 61.
DE RecName: Full=Probable glycosyltransferase 5 {ECO:0000305};
DE Short=OsGT5 {ECO:0000303|PubMed:24834920};
DE EC=2.4.-.- {ECO:0000305};
GN Name=GT5 {ECO:0000303|PubMed:24834920};
GN OrderedLocusNames=Os03g0306100 {ECO:0000312|EMBL:BAH92117.1},
GN LOC_Os03g19330 {ECO:0000312|EMBL:ABF95527.1};
GN ORFNames=OsJ_10556 {ECO:0000312|EMBL:EAZ26652.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP INDUCTION.
RX PubMed=24042130; DOI=10.1016/j.gene.2013.09.004;
RA Lu Y.C., Yang S.N., Zhang J.J., Zhang J.J., Tan L.R., Yang H.;
RT "A collection of glycosyltransferases from rice (Oryza sativa) exposed to
RT atrazine.";
RL Gene 531:243-252(2013).
RN [7]
RP NOMENCLATURE.
RX PubMed=24834920; DOI=10.1093/jxb/eru189;
RA Wang C., Li S., Ng S., Zhang B., Zhou Y., Whelan J., Wu P., Shou H.;
RT "Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair
RT development in Oryza sativa.";
RL J. Exp. Bot. 65:4149-4157(2014).
CC -!- FUNCTION: Probable glycosyltransferase that may be involved in the
CC biosynthesis of xyloglucan. {ECO:0000250|UniProtKB:Q10MQ0}.
CC -!- SUBCELLULAR LOCATION: Golgi apparatus membrane {ECO:0000305}; Single-
CC pass type II membrane protein {ECO:0000305}.
CC -!- INDUCTION: Down-regulated by treatment with atrazine.
CC {ECO:0000269|PubMed:24042130}.
CC -!- SIMILARITY: Belongs to the glycosyltransferase 34 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=ABF95527.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=EAZ26652.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; DP000009; ABF95527.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP008209; BAH92117.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS83811.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ26652.1; ALT_INIT; Genomic_DNA.
DR RefSeq; XP_015630649.1; XM_015775163.1.
DR AlphaFoldDB; C7J0P3; -.
DR SMR; C7J0P3; -.
DR STRING; 4530.OS03T0306100-00; -.
DR PaxDb; C7J0P3; -.
DR PRIDE; C7J0P3; -.
DR EnsemblPlants; Os03t0306100-00; Os03t0306100-00; Os03g0306100.
DR GeneID; 9269659; -.
DR Gramene; Os03t0306100-00; Os03t0306100-00; Os03g0306100.
DR KEGG; osa:9269659; -.
DR eggNOG; KOG4748; Eukaryota.
DR HOGENOM; CLU_034328_1_1_1; -.
DR InParanoid; C7J0P3; -.
DR OMA; RRHYRRC; -.
DR OrthoDB; 1223199at2759; -.
DR PlantReactome; R-OSA-5655101; Xyloglucan biosynthesis.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; C7J0P3; OS.
DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016758; F:hexosyltransferase activity; IBA:GO_Central.
DR GO; GO:0009969; P:xyloglucan biosynthetic process; IBA:GO_Central.
DR Gene3D; 3.90.550.10; -; 1.
DR InterPro; IPR008630; Glyco_trans_34.
DR InterPro; IPR029044; Nucleotide-diphossugar_trans.
DR PANTHER; PTHR31311; PTHR31311; 1.
DR Pfam; PF05637; Glyco_transf_34; 1.
PE 2: Evidence at transcript level;
KW Glycoprotein; Glycosyltransferase; Golgi apparatus; Membrane;
KW Reference proteome; Signal-anchor; Transferase; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..449
FT /note="Probable glycosyltransferase 5"
FT /id="PRO_0000434331"
FT TOPO_DOM 1..28
FT /note="Cytoplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 29..49
FT /note="Helical; Signal-anchor for type II membrane protein"
FT /evidence="ECO:0000255"
FT TOPO_DOM 50..449
FT /note="Lumenal"
FT /evidence="ECO:0000305"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 74..109
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..21
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CARBOHYD 89
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 413
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 422
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
SQ SEQUENCE 449 AA; 50416 MW; F10E372D8FB12092 CRC64;
MMEKHGGKVT SDRRAGRRQH GQRCSASDAA PLVVVVILIV AALFLILGPT GSSSFTVPRI
RVVFNEPVHV AVAAPPPPPP PAQMQAGANA SSEEDSGLPP PRQLTDPPYS LGRTILGYDA
RRSAWLAAHP EFPARVAPAG RPRVLVVTGS APARCPDPDG DHLLLRAFKN KVDYCRIHGL
DVFYNTAFLD AEMSGFWAKL PLLRMLMVAH PEAELIWWVD SDAVFTDMLF EIPWERYAVH
NLVLHGWEAK VFDEKSWIGV NTGSFLIRNC QWSLDLLDAW APMGPRGPVR DRYGELFAEE
LSGRPPFEAD DQSALIYLLV TQRQRWGDKV FIESSYDLNG FWEGIVDKYE ELRRAGRDDG
RWPFVTHFVG CKPCRRYADS YPAERCRRGM ERAFNFADDQ ILKLYGFAHE SLNTTAVRRV
RNETGEPLDA GDEELGRLLH PTFRAARPT
