GTE12_ARATH
ID GTE12_ARATH Reviewed; 494 AA.
AC Q9LS28; Q8GXL8;
DT 05-APR-2011, integrated into UniProtKB/Swiss-Prot.
DT 05-APR-2011, sequence version 2.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Transcription factor GTE12;
DE AltName: Full=Bromodomain-containing protein GTE12;
DE AltName: Full=Protein GLOBAL TRANSCRIPTION FACTOR GROUP E12;
GN Name=GTE12; OrderedLocusNames=At5g46550; ORFNames=F10E10.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI.";
RL Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12466527; DOI=10.1093/nar/gkf660;
RA Pandey R., Mueller A., Napoli C.A., Selinger D.A., Pikaard C.S.,
RA Richards E.J., Bender J., Mount D.W., Jorgensen R.A.;
RT "Analysis of histone acetyltransferase and histone deacetylase families of
RT Arabidopsis thaliana suggests functional diversification of chromatin
RT modification among multicellular eukaryotes.";
RL Nucleic Acids Res. 30:5036-5055(2002).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA97526.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB028605; BAA97526.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED95397.1; -; Genomic_DNA.
DR EMBL; AK118168; BAC42791.1; -; mRNA.
DR RefSeq; NP_199467.2; NM_124025.4.
DR AlphaFoldDB; Q9LS28; -.
DR SMR; Q9LS28; -.
DR STRING; 3702.AT5G46550.1; -.
DR iPTMnet; Q9LS28; -.
DR PaxDb; Q9LS28; -.
DR PRIDE; Q9LS28; -.
DR ProteomicsDB; 247228; -.
DR EnsemblPlants; AT5G46550.1; AT5G46550.1; AT5G46550.
DR GeneID; 834698; -.
DR Gramene; AT5G46550.1; AT5G46550.1; AT5G46550.
DR KEGG; ath:AT5G46550; -.
DR Araport; AT5G46550; -.
DR TAIR; locus:2142305; AT5G46550.
DR eggNOG; KOG1474; Eukaryota.
DR HOGENOM; CLU_007920_2_0_1; -.
DR InParanoid; Q9LS28; -.
DR OMA; RIICICL; -.
DR OrthoDB; 1407769at2759; -.
DR PhylomeDB; Q9LS28; -.
DR PRO; PR:Q9LS28; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LS28; baseline and differential.
DR Genevisible; Q9LS28; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR CDD; cd05506; Bromo_plant1; 1.
DR Gene3D; 1.20.920.10; -; 1.
DR InterPro; IPR001487; Bromodomain.
DR InterPro; IPR036427; Bromodomain-like_sf.
DR InterPro; IPR037377; GTE_bromo.
DR Pfam; PF00439; Bromodomain; 1.
DR PRINTS; PR00503; BROMODOMAIN.
DR SMART; SM00297; BROMO; 1.
DR SUPFAM; SSF47370; SSF47370; 1.
DR PROSITE; PS50014; BROMODOMAIN_2; 1.
PE 2: Evidence at transcript level;
KW Bromodomain; Coiled coil; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..494
FT /note="Transcription factor GTE12"
FT /id="PRO_0000406343"
FT DOMAIN 81..153
FT /note="Bromo"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00035"
FT REGION 33..61
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 191..237
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 286..318
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 366..428
FT /evidence="ECO:0000255"
FT COMPBIAS 197..237
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 494 AA; 55619 MW; A27343ED5203B346 CRC64;
MVAIPNIKIK FGPQGSVRTF QTLSDSSKKI EHVVTEDLSQ SSEKSKKRGG PKELDEVQPK
KKQRLDCDWS SQCLALLRFL MEHRGGWLFK EPVDPVKMEI PDYFNVIQKP MDLGTVKSKL
LKNVYSNADE FAADVRLTFA NAMHYNPLWN EVHTIAKEIN EIFEVRWESL MKKKVLRLSW
NEVREGYKRQ PVERDCSRRS STGTSASSGV GLTKPAKENS EKGSLSSKPV KVQSKKNTPA
VTPKALATCK CGRIICICLK SCSSFGSDVC SLTDCQLKNI SGAQASELDP QSNGSDTSKK
ERNGSLKSQL DKPSNSDLLG NELKTAFPAL PPVPPEKALR AAILKAQYAG TIIKAKHRIV
LGQNNKADLI RIQIEKEQME RAQREEKARI EAEMRAAKVA ERMRAQDELK QKRESQRLEI
AKMKKGFDFE RNNHSKLKKK FVKVCGCFSL TKARLLLEEL GLVLKNDYCP ELEVIGSEKF
DAMRMDDLEE GEIL