GTE5_ARATH
ID GTE5_ARATH Reviewed; 487 AA.
AC Q8H1D7; Q93ZU2; Q9LMU8;
DT 05-APR-2011, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Transcription factor GTE5, chloroplastic;
DE AltName: Full=Bromodomain-containing protein GTE5;
DE AltName: Full=Protein GLOBAL TRANSCRIPTION FACTOR GROUP E5;
DE Flags: Precursor;
GN Name=GTE5; OrderedLocusNames=At1g17790; ORFNames=F2H15.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=12466527; DOI=10.1093/nar/gkf660;
RA Pandey R., Mueller A., Napoli C.A., Selinger D.A., Pikaard C.S.,
RA Richards E.J., Bender J., Mount D.W., Jorgensen R.A.;
RT "Analysis of histone acetyltransferase and histone deacetylase families of
RT Arabidopsis thaliana suggests functional diversification of chromatin
RT modification among multicellular eukaryotes.";
RL Nucleic Acids Res. 30:5036-5055(2002).
RN [5]
RP INTERACTION WITH SIZ1, AND SUMOYLATION.
RX PubMed=18502747; DOI=10.1074/jbc.m708176200;
RA Garcia-Dominguez M., March-Diaz R., Reyes J.C.;
RT "The PHD domain of plant PIAS proteins mediates sumoylation of bromodomain
RT GTE proteins.";
RL J. Biol. Chem. 283:21469-21477(2008).
CC -!- SUBUNIT: Interacts with SIZ1 (via PHD domain).
CC {ECO:0000269|PubMed:18502747}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- DOMAIN: The NET domain could serve as an interface to localize
CC different proteins or complexes to chromatin.
CC -!- PTM: Sumoylated by SIZ1. {ECO:0000269|PubMed:18502747}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF97259.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC034106; AAF97259.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE29637.1; -; Genomic_DNA.
DR EMBL; AY056258; AAL07107.1; -; mRNA.
DR EMBL; AY150503; AAN13019.1; -; mRNA.
DR PIR; H86312; H86312.
DR RefSeq; NP_564037.1; NM_101642.3.
DR AlphaFoldDB; Q8H1D7; -.
DR SMR; Q8H1D7; -.
DR BioGRID; 23596; 1.
DR STRING; 3702.AT1G17790.1; -.
DR iPTMnet; Q8H1D7; -.
DR PaxDb; Q8H1D7; -.
DR PRIDE; Q8H1D7; -.
DR ProteomicsDB; 247140; -.
DR EnsemblPlants; AT1G17790.1; AT1G17790.1; AT1G17790.
DR GeneID; 838357; -.
DR Gramene; AT1G17790.1; AT1G17790.1; AT1G17790.
DR KEGG; ath:AT1G17790; -.
DR Araport; AT1G17790; -.
DR TAIR; locus:2030958; AT1G17790.
DR eggNOG; KOG1474; Eukaryota.
DR HOGENOM; CLU_009580_1_0_1; -.
DR InParanoid; Q8H1D7; -.
DR OMA; NRTWERE; -.
DR OrthoDB; 861333at2759; -.
DR PhylomeDB; Q8H1D7; -.
DR PRO; PR:Q8H1D7; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8H1D7; baseline and differential.
DR Genevisible; Q8H1D7; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR Gene3D; 1.20.1270.220; -; 1.
DR Gene3D; 1.20.920.10; -; 1.
DR InterPro; IPR001487; Bromodomain.
DR InterPro; IPR036427; Bromodomain-like_sf.
DR InterPro; IPR027353; NET_dom.
DR InterPro; IPR038336; NET_sf.
DR Pfam; PF17035; BET; 1.
DR Pfam; PF00439; Bromodomain; 1.
DR PRINTS; PR00503; BROMODOMAIN.
DR SMART; SM00297; BROMO; 1.
DR SUPFAM; SSF47370; SSF47370; 1.
DR PROSITE; PS50014; BROMODOMAIN_2; 1.
DR PROSITE; PS51525; NET; 1.
PE 1: Evidence at protein level;
KW Bromodomain; Chloroplast; Plastid; Reference proteome; Transcription;
KW Transcription regulation; Transit peptide; Ubl conjugation.
FT TRANSIT 1..32
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 33..487
FT /note="Transcription factor GTE5, chloroplastic"
FT /id="PRO_0000406337"
FT DOMAIN 144..216
FT /note="Bromo"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00035"
FT DOMAIN 320..401
FT /note="NET"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00857"
FT REGION 1..48
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 93..127
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 400..487
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..30
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 400..416
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 417..487
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 181
FT /note="T -> I (in Ref. 3; AAL07107)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 487 AA; 53455 MW; E3AFE343D86609BD CRC64;
MSSEHISGGG ASKTKKHKWS SSQNRPKPMG VSRQERSVPL VSPSNSFASE DDHHMLKISL
SSISKLEVRN LKRKLKSELD EVRSLIKRFD PEANPGGSMA KSGVVGRSKK VKTGNGGGKK
SGHGADKGTV QIFKNCNSLL TKLMKHKSAW VFNVPVDAKG LGLHDYHNIV KEPMDLGTVK
TKLGKSLYKS PLDFAEDVRL TFNNAILYNP IGHDVYRFAE LLLNMFEDKW VSIEMQYDNL
HRKFKPTRDI EFPAPAPSIA PIVEPLPAIV PSPSPSSPPP PPPPPVAAPV LENRTWEREE
SMTIPVEPEA VITAPEKAEE EEAPVNNRDL TLEEKRRLSE ELQDLPYDKL ETVVQIIKKS
NPELSQKDDE IELDIDSLDI NTLWELYRFV TGYKESLSKK NEAHGFGSER DAESVHNSIQ
EPTTLVSGTT TSRVTESGKA IRTSSPARQE NNASGSSSSN SSSSDSGSCS SDTDSDSSSG
RGSDNGN
