AMT11_ORYSJ
ID AMT11_ORYSJ Reviewed; 498 AA.
AC Q7XQ12; A0A0P0WCB2; O04400; Q56UT5; Q947N1;
DT 13-OCT-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=Ammonium transporter 1 member 1;
DE Short=OsAMT1;1;
GN Name=AMT1-1; Synonyms=AMT1; OrderedLocusNames=Os04g0509600, LOC_Os04g43070;
GN ORFNames=OsJ_15423, OSJNBb0065L13.7;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare; TISSUE=Root;
RA von Wiren N., Bergfeld A., Ninnemann O., Frommer W.B.;
RT "OsAMT1-1, a putative ammonium transporter cDNA from rice.";
RL Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RA Hoque M.S., Masle J., Udvardi M.K., Upadhyaya N.M.;
RT "Cloning and characterization of three ammonium transporter genes from
RT rice.";
RL Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Dongjin;
RA Yun S.J., Baek S.-H., Park M.-R., Park M.-H., Lim J.-H., Kook H.-S.;
RT "Regulation of rice OsAMT gene expression by nutrient availability.";
RL Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [7]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [8]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [9]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [10]
RP FUNCTION.
RX PubMed=12610225; DOI=10.1093/pcp/pcg017;
RA Suenaga A., Moriya K., Sonoda Y., Ikeda A., von Wiren N., Hayakawa T.,
RA Yamaguchi J., Yamaya T.;
RT "Constitutive expression of a novel-type ammonium transporter OsAMT2 in
RT rice plants.";
RL Plant Cell Physiol. 44:206-211(2003).
RN [11]
RP FUNCTION, TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=12881500; DOI=10.1093/pcp/pcg083;
RA Sonoda Y., Ikeda A., Saiki S., von Wiren N., Yamaya T., Yamaguchi J.;
RT "Distinct expression and function of three ammonium transporter genes
RT (OsAMT1;1-1;3) in rice.";
RL Plant Cell Physiol. 44:726-734(2003).
RN [12]
RP INDUCTION.
RX PubMed=14701935; DOI=10.1093/pcp/pcg169;
RA Sonoda Y., Ikeda A., Saiki S., Yamaya T., Yamaguchi J.;
RT "Feedback regulation of the ammonium transporter gene family AMT1 by
RT glutamine in rice.";
RL Plant Cell Physiol. 44:1396-1402(2003).
CC -!- FUNCTION: Ammonium transporter probably involved in ammonium uptake
CC from the soil. {ECO:0000269|PubMed:12610225,
CC ECO:0000269|PubMed:12881500}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots and shoots.
CC {ECO:0000269|PubMed:12881500}.
CC -!- INDUCTION: By ammonium or glutamine supply in roots.
CC {ECO:0000269|PubMed:12881500, ECO:0000269|PubMed:14701935}.
CC -!- SIMILARITY: Belongs to the ammonia transporter channel (TC 1.A.11.2)
CC family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAB58937.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=AAB58937.1; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
CC Sequence=AAL05612.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=AAU84432.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AF001505; AAB58937.1; ALT_SEQ; mRNA.
DR EMBL; AF289477; AAL05612.1; ALT_FRAME; Genomic_DNA.
DR EMBL; AY569614; AAU84432.1; ALT_FRAME; mRNA.
DR EMBL; AL606607; CAE03364.1; -; Genomic_DNA.
DR EMBL; AP008210; BAF15194.1; -; Genomic_DNA.
DR EMBL; AP014960; BAS90026.1; -; Genomic_DNA.
DR EMBL; CM000141; EAZ31310.1; -; Genomic_DNA.
DR EMBL; AK073718; BAG93605.1; -; mRNA.
DR PIR; T03441; T03441.
DR RefSeq; XP_015636241.1; XM_015780755.1.
DR AlphaFoldDB; Q7XQ12; -.
DR SMR; Q7XQ12; -.
DR STRING; 4530.OS04T0509600-01; -.
DR PaxDb; Q7XQ12; -.
DR PRIDE; Q7XQ12; -.
DR EnsemblPlants; Os04t0509600-01; Os04t0509600-01; Os04g0509600.
DR GeneID; 4336365; -.
DR Gramene; Os04t0509600-01; Os04t0509600-01; Os04g0509600.
DR KEGG; osa:4336365; -.
DR eggNOG; KOG0682; Eukaryota.
DR InParanoid; Q7XQ12; -.
DR OrthoDB; 910733at2759; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000007752; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR ExpressionAtlas; Q7XQ12; baseline and differential.
DR Genevisible; Q7XQ12; OS.
DR GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
DR GO; GO:0008519; F:ammonium transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0097272; P:ammonium homeostasis; IBA:GO_Central.
DR GO; GO:0072488; P:ammonium transmembrane transport; IBA:GO_Central.
DR Gene3D; 1.10.3430.10; -; 1.
DR InterPro; IPR029020; Ammonium/urea_transptr.
DR InterPro; IPR001905; Ammonium_transpt.
DR InterPro; IPR018047; Ammonium_transpt_CS.
DR InterPro; IPR024041; NH4_transpt_AmtB-like_dom.
DR Pfam; PF00909; Ammonium_transp; 1.
DR TIGRFAMs; TIGR00836; amt; 1.
DR PROSITE; PS01219; AMMONIUM_TRANSP; 1.
PE 2: Evidence at transcript level;
KW Ammonia transport; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix; Transport.
FT CHAIN 1..498
FT /note="Ammonium transporter 1 member 1"
FT /id="PRO_0000385644"
FT TRANSMEM 39..59
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 74..94
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 120..140
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 148..168
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 192..212
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 236..256
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 274..296
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 307..327
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 331..351
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 360..380
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 411..431
FT /note="Helical"
FT /evidence="ECO:0000255"
FT CONFLICT 256
FT /note="F -> S (in Ref. 3; AAU84432)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 498 AA; 52650 MW; E781CDA917745778 CRC64;
MATCAADLAP LLGPVAANAT DYLCNRFADT TSAVDATYLL FSAYLVFAMQ LGFAMLCAGS
VRAKNTMNIM LTNVLDAAAG ALFYYLFGFA FAFGTPSNGF IGKQFFGLKH MPQTGFDYDF
FLFQWAFAIA AAGITSGSIA ERTQFVAYLI YSAFLTGFVY PVVSHWIWSA DGWASASRTS
GPLLFGSGVI DFAGSGVVHM VGGVAGLWGA LIEGPRIGRF DHAGRSVALK GHSASLVVLG
TFLLWFGWYG FNPGSFTTIL KTYGPAGGIN GQWSGVGRTA VTTTLAGSVA ALTTLFGKRL
QTGHWNVVDV CNGLLGGFAA ITAGCSVVDP WAAIICGFVS AWVLIGLNAL AARLKFDDPL
EAAQLHGGCG AWGILFTALF ARQKYVEEIY GAGRPYGLFM GGGGKLLAAH VIQILVIFGW
VSCTMGPLFY GLKKLGLLRI SAEDETSGMD LTRHGGFAYV YHDEDEHDKS GVGGFMLRSA
QTRVEPAAAA ASNSNNQV
