AMT12_ORYSJ
ID AMT12_ORYSJ Reviewed; 496 AA.
AC Q6K9G1; A0A0P0VLW2; A3A957; Q947M9;
DT 13-OCT-2009, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=Ammonium transporter 1 member 2;
DE Short=OsAMT1;2;
GN Name=AMT1-2; Synonyms=AMT1-3;
GN OrderedLocusNames=Os02g0620600, LOC_Os02g40730;
GN ORFNames=OJ1234_B11.3, OJ1372_D06.28, OsJ_07562;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RA Hoque M.S., Masle J., Udvardi M.K., Upadhyaya N.M.;
RT "Cloning and characterization of three ammonium transporter genes from
RT rice.";
RL Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION, TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=12881500; DOI=10.1093/pcp/pcg083;
RA Sonoda Y., Ikeda A., Saiki S., von Wiren N., Yamaya T., Yamaguchi J.;
RT "Distinct expression and function of three ammonium transporter genes
RT (OsAMT1;1-1;3) in rice.";
RL Plant Cell Physiol. 44:726-734(2003).
RN [8]
RP INDUCTION.
RX PubMed=14701935; DOI=10.1093/pcp/pcg169;
RA Sonoda Y., Ikeda A., Saiki S., Yamaya T., Yamaguchi J.;
RT "Feedback regulation of the ammonium transporter gene family AMT1 by
RT glutamine in rice.";
RL Plant Cell Physiol. 44:1396-1402(2003).
CC -!- FUNCTION: Ammonium transporter probably involved in ammonium uptake
CC from the soil and ammonium uptake and retrieval in the vascular system.
CC {ECO:0000269|PubMed:12881500}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in exodermis, sclerenchyma, endodermis
CC and pericycle cells of primary root tips.
CC {ECO:0000269|PubMed:12881500}.
CC -!- INDUCTION: By ammonium or glutamine supply in roots.
CC {ECO:0000269|PubMed:12881500, ECO:0000269|PubMed:14701935}.
CC -!- SIMILARITY: Belongs to the ammonia transporter channel (TC 1.A.11.2)
CC family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAL05614.1; Type=Frameshift; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AF289479; AAL05614.1; ALT_FRAME; Genomic_DNA.
DR EMBL; AP004053; BAD21534.1; -; Genomic_DNA.
DR EMBL; AP004059; BAD21574.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09370.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS79819.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ23846.1; -; Genomic_DNA.
DR EMBL; AK107204; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015623207.1; XM_015767721.1.
DR AlphaFoldDB; Q6K9G1; -.
DR SMR; Q6K9G1; -.
DR STRING; 4530.OS02T0620600-01; -.
DR PaxDb; Q6K9G1; -.
DR PRIDE; Q6K9G1; -.
DR EnsemblPlants; Os02t0620600-01; Os02t0620600-01; Os02g0620600.
DR GeneID; 4330008; -.
DR Gramene; Os02t0620600-01; Os02t0620600-01; Os02g0620600.
DR KEGG; osa:4330008; -.
DR eggNOG; KOG0682; Eukaryota.
DR HOGENOM; CLU_000445_33_1_1; -.
DR InParanoid; Q6K9G1; -.
DR OMA; MACWNSN; -.
DR OrthoDB; 910733at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6K9G1; OS.
DR GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
DR GO; GO:0008519; F:ammonium transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0097272; P:ammonium homeostasis; IBA:GO_Central.
DR GO; GO:0072488; P:ammonium transmembrane transport; IBA:GO_Central.
DR Gene3D; 1.10.3430.10; -; 1.
DR InterPro; IPR029020; Ammonium/urea_transptr.
DR InterPro; IPR001905; Ammonium_transpt.
DR InterPro; IPR018047; Ammonium_transpt_CS.
DR InterPro; IPR024041; NH4_transpt_AmtB-like_dom.
DR Pfam; PF00909; Ammonium_transp; 1.
DR TIGRFAMs; TIGR00836; amt; 1.
DR PROSITE; PS01219; AMMONIUM_TRANSP; 1.
PE 2: Evidence at transcript level;
KW Ammonia transport; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix; Transport.
FT CHAIN 1..496
FT /note="Ammonium transporter 1 member 2"
FT /id="PRO_0000385645"
FT TRANSMEM 39..59
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 74..94
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 120..140
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 148..168
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 192..212
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 236..256
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 274..296
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 307..327
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 331..351
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 360..380
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 412..432
FT /note="Helical"
FT /evidence="ECO:0000255"
FT CONFLICT 63
FT /note="A -> V (in Ref. 6; AK107204)"
FT /evidence="ECO:0000305"
FT CONFLICT 103
FT /note="K -> N (in Ref. 6; AK107204)"
FT /evidence="ECO:0000305"
FT CONFLICT 202..218
FT /note="GGVAGLWGALIEGPRIG -> AACRTLGRPHRGPPHW (in Ref. 1;
FT AAL05614)"
FT /evidence="ECO:0000305"
FT CONFLICT 475
FT /note="V -> F (in Ref. 1; AAL05614 and 5; EAZ23846)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 496 AA; 52287 MW; 54FB16572A48C37B CRC64;
MATCADTLGP LLGTAAANAT DYLCNQFADT TSAVDSTYLL FSAYLVFAMQ LGFAMLCAGS
VRAKNTMNIM LTNVLDAAAG ALFYYLFGFA FAFGAPSNGF IGKHFFGLKQ VPQVGFDYSF
FLFQWAFAIA AAGITSGSIA ERTQFVAYLI YSAFLTGFVY PVVSHWIWSA DGWASASRTS
GSLLFGSGVI DFAGSGVVHM VGGVAGLWGA LIEGPRIGRF DHAGRSVALR GHSASLVVLG
SFLLWFGWYG FNPGSFLTIL KSYGPPGSIH GQWSAVGRTA VTTTLAGSTA ALTTLFGKRL
QTGHWNVIDV CNGLLGGFAA ITAGCSVVDP WAAIICGFVS AWVLIGLNAL AARLKFDDPL
EAAQLHGGCG AWGVIFTALF ARKEYVDQIF GQPGRPYGLF MGGGGRLLGA HIVVILVIAA
WVSFTMAPLF LVLNKLGLLR ISAEDEMAGM DQTRHGGFAY AYHDDDASGK PDRSVGGFML
KSAHGTQVAA EMGGHV
