AMT13_ORYSJ
ID AMT13_ORYSJ Reviewed; 498 AA.
AC Q6K9G3; A0A0N7KFP8; Q947N0;
DT 13-OCT-2009, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=Ammonium transporter 1 member 3;
DE Short=OsAMT1;3;
GN Name=AMT1-3; Synonyms=AMT1-2;
GN OrderedLocusNames=Os02g0620500, LOC_Os02g40710;
GN ORFNames=OJ1234_B11.1, OJ1372_D06.26, OsJ_07561;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RA Hoque M.S., Masle J., Udvardi M.K., Upadhyaya N.M.;
RT "Cloning and characterization of three ammonium transporter genes from
RT rice.";
RL Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP FUNCTION.
RX PubMed=12610225; DOI=10.1093/pcp/pcg017;
RA Suenaga A., Moriya K., Sonoda Y., Ikeda A., von Wiren N., Hayakawa T.,
RA Yamaguchi J., Yamaya T.;
RT "Constitutive expression of a novel-type ammonium transporter OsAMT2 in
RT rice plants.";
RL Plant Cell Physiol. 44:206-211(2003).
RN [7]
RP FUNCTION, TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=12881500; DOI=10.1093/pcp/pcg083;
RA Sonoda Y., Ikeda A., Saiki S., von Wiren N., Yamaya T., Yamaguchi J.;
RT "Distinct expression and function of three ammonium transporter genes
RT (OsAMT1;1-1;3) in rice.";
RL Plant Cell Physiol. 44:726-734(2003).
RN [8]
RP INDUCTION.
RX PubMed=14701935; DOI=10.1093/pcp/pcg169;
RA Sonoda Y., Ikeda A., Saiki S., Yamaya T., Yamaguchi J.;
RT "Feedback regulation of the ammonium transporter gene family AMT1 by
RT glutamine in rice.";
RL Plant Cell Physiol. 44:1396-1402(2003).
CC -!- FUNCTION: Ammonium transporter probably involved in ammonium uptake
CC from the soil. {ECO:0000269|PubMed:12610225,
CC ECO:0000269|PubMed:12881500}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12881500}.
CC -!- INDUCTION: Down-regulated by ammonium or glutamine supply in roots.
CC {ECO:0000269|PubMed:12881500, ECO:0000269|PubMed:14701935}.
CC -!- SIMILARITY: Belongs to the ammonia transporter channel (TC 1.A.11.2)
CC family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAL05613.1; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
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DR EMBL; AF289478; AAL05613.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP004053; BAD21532.1; -; Genomic_DNA.
DR EMBL; AP004059; BAD21572.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09369.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS79817.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ23845.1; -; Genomic_DNA.
DR RefSeq; XP_015624850.1; XM_015769364.1.
DR AlphaFoldDB; Q6K9G3; -.
DR SMR; Q6K9G3; -.
DR STRING; 4530.OS02T0620500-00; -.
DR PaxDb; Q6K9G3; -.
DR PRIDE; Q6K9G3; -.
DR EnsemblPlants; Os02t0620500-00; Os02t0620500-00; Os02g0620500.
DR GeneID; 4330007; -.
DR Gramene; Os02t0620500-00; Os02t0620500-00; Os02g0620500.
DR KEGG; osa:4330007; -.
DR eggNOG; KOG0682; Eukaryota.
DR HOGENOM; CLU_000445_33_1_1; -.
DR InParanoid; Q6K9G3; -.
DR OMA; VYCPQAY; -.
DR OrthoDB; 910733at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6K9G3; OS.
DR GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
DR GO; GO:0008519; F:ammonium transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0097272; P:ammonium homeostasis; IBA:GO_Central.
DR GO; GO:0072488; P:ammonium transmembrane transport; IBA:GO_Central.
DR Gene3D; 1.10.3430.10; -; 1.
DR InterPro; IPR029020; Ammonium/urea_transptr.
DR InterPro; IPR001905; Ammonium_transpt.
DR InterPro; IPR018047; Ammonium_transpt_CS.
DR InterPro; IPR024041; NH4_transpt_AmtB-like_dom.
DR Pfam; PF00909; Ammonium_transp; 1.
DR TIGRFAMs; TIGR00836; amt; 1.
DR PROSITE; PS01219; AMMONIUM_TRANSP; 1.
PE 2: Evidence at transcript level;
KW Ammonia transport; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix; Transport.
FT CHAIN 1..498
FT /note="Ammonium transporter 1 member 3"
FT /id="PRO_0000385646"
FT TRANSMEM 41..61
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 76..96
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 122..142
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 150..170
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 194..214
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 238..258
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 277..299
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 307..327
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 329..349
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 362..382
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 414..434
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 473..498
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 498 AA; 53163 MW; A0F7BF5818A9E845 CRC64;
MATCLDSLGP LLGGAANSTD AANYICNRFT DTSSAVDATY LLFSAYLVFA MQLGFAMLCA
GSVRAKNSMN IMLTNVLDAA AGALFYYLFG FAFAFGTPSK GFIGKQFFGL KHMPQTGYDY
DFFLFQWAFA IAAAGITSGS IAERTRFSAY LIYSAFLTGF VYPVVSHWFW STDGWASAGR
LTGPLLFKSG VIDFAGSGVV HLVGGIAGLW GAFIEGPRIG RFDAAGRTVA MKGHSASLVV
LGTFLLWFGW FGFNPGSFTT ISKIYGESGT IDGQWSAVGR TAVTTSLAGS VAALTTLYGK
RWLTGHWNVT DVCNGLLGGF AAITAGCSVV DPWASVICGF VSAWVLIGCN KLSLILKFDD
PLEATQLHAG CGAWGIIFTA LFARREYVEL IYGVPGRPYG LFMGGGGRLL AAHIVQILVI
VGWVSATMGT LFYVLHRFGL LRVSPATEME GMDPTCHGGF GYVDEDEGER RVRAKSAAET
ARVEPRKSPE QAAAGQFV
