H32_ORYSJ
ID H32_ORYSJ Reviewed; 136 AA.
AC Q2RAD9; P05203; P05329; P05330; P08860; P69247; Q53WV5; Q7F4Z4;
DT 24-JUL-2007, integrated into UniProtKB/Swiss-Prot.
DT 11-JUL-2006, sequence version 1.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=Histone H3.2;
GN OrderedLocusNames=Os01g0866200 {ECO:0000312|EMBL:BAF06818.1},
GN LOC_Os01g64640 {ECO:0000305};
GN ORFNames=OsJ_004096 {ECO:0000312|EMBL:EAZ14271.1},
GN P0505D12.33 {ECO:0000312|EMBL:BAC01212.1};
GN and
GN OrderedLocusNames=Os04g0419600 {ECO:0000312|EMBL:BAF14690.1},
GN LOC_Os04g34240 {ECO:0000305};
GN ORFNames=OsJ_014206 {ECO:0000312|EMBL:EAZ30723.1},
GN OSJNBb0108J11.17 {ECO:0000312|EMBL:CAE02924.1};
GN and
GN OrderedLocusNames=Os05g0438700 {ECO:0000312|EMBL:BAF17574.1},
GN LOC_Os05g36280 {ECO:0000305};
GN ORFNames=OSJNBb0042J17.11 {ECO:0000312|EMBL:AAT07615.1};
GN and
GN Name=H3R-11;
GN OrderedLocusNames=Os06g0159501 {ECO:0000305}, LOC_Os06g06460 {ECO:0000305};
GN ORFNames=OsJ_019386 {ECO:0000312|EMBL:EAZ35903.1},
GN P0702F05.33 {ECO:0000312|EMBL:BAD46448.1};
GN and
GN OrderedLocusNames=Os06g0160001 {ECO:0000312|EMBL:BAS96275.1};
GN ORFNames=P0681F10.3 {ECO:0000312|EMBL:BAA81840.1},
GN P0702F05.38 {ECO:0000312|EMBL:BAD46453.1};
GN and
GN OrderedLocusNames=Os06g0160100 {ECO:0000312|EMBL:BAF18791.1},
GN LOC_Os06g06510 {ECO:0000305};
GN ORFNames=P0681F10.4 {ECO:0000312|EMBL:BAA81841.1},
GN P0702F05.39 {ECO:0000312|EMBL:BAD46454.1};
GN and
GN Name=H3R-21;
GN OrderedLocusNames=Os11g0155900 {ECO:0000312|EMBL:BAT12754.1},
GN LOC_Os11g05730 {ECO:0000305};
GN ORFNames=OSJNBb0030I09 {ECO:0000312|EMBL:AAX92719.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=3026911; DOI=10.1016/0378-1119(86)90022-3;
RA Peng Z.-G., Wu R.;
RT "A simple and rapid nucleotide sequencing strategy and its application in
RT analyzing a rice histone 3 gene.";
RL Gene 45:247-252(1986).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=2726464; DOI=10.1093/nar/17.8.3297;
RA Wu S.C., Vegh Z., Wang X.-M., Tan C.C., Dudits D.;
RT "The nucleotide sequences of two rice histone H3 genes.";
RL Nucleic Acids Res. 17:3297-3297(1989).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [8]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [9]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [10]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: Core component of nucleosome. Nucleosomes wrap and compact
CC DNA into chromatin, limiting DNA accessibility to the cellular
CC machineries which require DNA as a template. Histones thereby play a
CC central role in transcription regulation, DNA repair, DNA replication
CC and chromosomal stability. DNA accessibility is regulated via a complex
CC set of post-translational modifications of histones, also called
CC histone code, and nucleosome remodeling.
CC -!- SUBUNIT: The nucleosome is a histone octamer containing two molecules
CC each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and
CC two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of
CC DNA.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}. Chromosome {ECO:0000250}.
CC -!- PTM: Acetylation is generally linked to gene activation. Can be
CC acetylated to form H3K9ac, H3K14ac, H3K18ac and H3K23ac. H3K9ac could
CC compete with H3K9me and prevent gene silencing. H3K9ac is restricted to
CC euchromatin (By similarity). {ECO:0000250}.
CC -!- PTM: Methylated to form mainly H3K4me, H3K9me, H3K18me, H3K23me,
CC H3K27me and H3K36me. H3K4me1/2/3, H3K9me3, H3K27me3 and H3K36me1/2/3
CC are typical marks for euchromatin, whereas heterochromatic
CC chromocenters are enriched in H3K9me1/2 and H3K27me1/2. H2BK143ub1 is
CC probably prerequisite for H3K4me (By similarity). {ECO:0000250}.
CC -!- PTM: Can be phosphorylated to form H3S10ph, H3T11ph and H3S28ph.
CC {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the histone H3 family. {ECO:0000305}.
CC -!- CAUTION: To ensure consistency between histone entries, we follow the
CC 'Brno' nomenclature for histone modifications, with positions referring
CC to those used in the literature for the 'closest' model organism. Due
CC to slight variations in histone sequences between organisms and to the
CC presence of initiator methionine in UniProtKB/Swiss-Prot sequences, the
CC actual positions of modified amino acids in the sequence generally
CC differ. In this entry the following conventions are used: H3K4me =
CC methylated Lys-5; H3K9ac = acetylated Lys-10; H3K9me = methylated Lys-
CC 10; H3S10ph = phosphorylated Ser-11; H3T11ph = phosphorylated Thr-12;
CC H3K14ac = acetylated Lys-15; H3K18ac = acetylated Lys-19; H3K18me =
CC methylated Lys-19; H3K23ac = acetylated Lys-24; H3K23me = methylated
CC Lys-24; H3K27me = methylated Lys-28; H3S28ph = phosphorylated Ser-29;
CC H3K36me = methylated Lys-37. {ECO:0000305}.
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DR EMBL; M15664; AAA33907.1; -; Genomic_DNA.
DR EMBL; X13678; CAA31969.1; -; Genomic_DNA.
DR EMBL; X13680; CAA31970.1; -; Genomic_DNA.
DR EMBL; AP003270; BAC01212.1; -; Genomic_DNA.
DR EMBL; AL606618; CAE02924.1; -; Genomic_DNA.
DR EMBL; AC134930; AAT07615.1; -; Genomic_DNA.
DR EMBL; AB026295; BAA81840.1; -; Genomic_DNA.
DR EMBL; AB026295; BAA81841.1; -; Genomic_DNA.
DR EMBL; AP005828; BAD46448.1; -; Genomic_DNA.
DR EMBL; AP005828; BAD46453.1; -; Genomic_DNA.
DR EMBL; AP005828; BAD46454.1; -; Genomic_DNA.
DR EMBL; AC112209; AAX92719.1; -; Genomic_DNA.
DR EMBL; DP000010; ABA91537.2; -; Genomic_DNA.
DR EMBL; AP008207; BAF06818.1; -; Genomic_DNA.
DR EMBL; AP008210; BAF14690.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF17574.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18791.1; -; Genomic_DNA.
DR EMBL; AP008217; BAF27636.1; -; Genomic_DNA.
DR EMBL; AP014957; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP014960; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP014961; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP014962; BAS96275.1; -; Genomic_DNA.
DR EMBL; AP014967; BAT12754.1; -; Genomic_DNA.
DR EMBL; CM000138; EAZ14271.1; -; Genomic_DNA.
DR EMBL; CM000141; EAZ30723.1; -; Genomic_DNA.
DR EMBL; CM000143; EAZ35903.1; -; Genomic_DNA.
DR PIR; A25564; A25564.
DR PIR; S04099; S04099.
DR RefSeq; XP_015615109.1; XM_015759623.1.
DR RefSeq; XP_015639714.1; XM_015784228.1.
DR RefSeq; XP_015641515.1; XM_015786029.1.
DR RefSeq; XP_015642925.1; XM_015787439.1.
DR RefSeq; XP_015642926.1; XM_015787440.1.
DR RefSeq; XP_015642927.1; XM_015787441.1.
DR AlphaFoldDB; Q2RAD9; -.
DR SMR; Q2RAD9; -.
DR STRING; 4530.OS04T0419600-01; -.
DR PaxDb; Q2RAD9; -.
DR EnsemblPlants; Os06t0160001-00; Os06t0160001-00; Os06g0160001.
DR EnsemblPlants; Os11t0155900-00; Os11t0155900-00; Os11g0155900.
DR GeneID; 4325069; -.
DR GeneID; 4338913; -.
DR GeneID; 4340203; -.
DR GeneID; 4349820; -.
DR GeneID; 9269345; -.
DR GeneID; 9271591; -.
DR Gramene; Os06t0160001-00; Os06t0160001-00; Os06g0160001.
DR Gramene; Os11t0155900-00; Os11t0155900-00; Os11g0155900.
DR KEGG; osa:4325069; -.
DR KEGG; osa:4338913; -.
DR KEGG; osa:4340203; -.
DR KEGG; osa:4349820; -.
DR KEGG; osa:9269345; -.
DR KEGG; osa:9271591; -.
DR eggNOG; KOG1745; Eukaryota.
DR HOGENOM; CLU_078295_4_0_1; -.
DR InParanoid; Q2RAD9; -.
DR OrthoDB; 1564596at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 4.
DR Proteomes; UP000007752; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 6.
DR ExpressionAtlas; Q2RAD9; baseline and differential.
DR Genevisible; Q2RAD9; OS.
DR GO; GO:0000786; C:nucleosome; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0030527; F:structural constituent of chromatin; IEA:InterPro.
DR Gene3D; 1.10.20.10; -; 1.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR007125; Histone_H2A/H2B/H3.
DR InterPro; IPR000164; Histone_H3/CENP-A.
DR PANTHER; PTHR11426; PTHR11426; 1.
DR Pfam; PF00125; Histone; 1.
DR PRINTS; PR00622; HISTONEH3.
DR SMART; SM00428; H3; 1.
DR SUPFAM; SSF47113; SSF47113; 1.
DR PROSITE; PS00322; HISTONE_H3_1; 1.
DR PROSITE; PS00959; HISTONE_H3_2; 1.
PE 3: Inferred from homology;
KW Acetylation; Chromosome; DNA-binding; Methylation; Nucleosome core;
KW Nucleus; Phosphoprotein; Reference proteome.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0000250"
FT CHAIN 2..136
FT /note="Histone H3.2"
FT /id="PRO_0000221289"
FT REGION 1..43
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 5
FT /note="N6-methylated lysine"
FT /evidence="ECO:0000250"
FT MOD_RES 10
FT /note="N6-acetyllysine; alternate"
FT /evidence="ECO:0000250"
FT MOD_RES 10
FT /note="N6-methylated lysine; alternate"
FT /evidence="ECO:0000250"
FT MOD_RES 11
FT /note="Phosphoserine"
FT /evidence="ECO:0000250"
FT MOD_RES 12
FT /note="Phosphothreonine"
FT /evidence="ECO:0000250"
FT MOD_RES 15
FT /note="N6-acetyllysine"
FT /evidence="ECO:0000250"
FT MOD_RES 19
FT /note="N6-acetyllysine; alternate"
FT /evidence="ECO:0000250"
FT MOD_RES 19
FT /note="N6-methylated lysine; alternate"
FT /evidence="ECO:0000250"
FT MOD_RES 24
FT /note="N6-acetyllysine; alternate"
FT /evidence="ECO:0000250"
FT MOD_RES 24
FT /note="N6-methylated lysine; alternate"
FT /evidence="ECO:0000250"
FT MOD_RES 28
FT /note="N6-methylated lysine"
FT /evidence="ECO:0000250"
FT MOD_RES 29
FT /note="Phosphoserine"
FT /evidence="ECO:0000250"
FT MOD_RES 37
FT /note="N6-methylated lysine"
FT /evidence="ECO:0000250"
FT CONFLICT 87
FT /note="S -> T (in Ref. 1; AAA33907)"
FT /evidence="ECO:0000305"
FT CONFLICT 91
FT /note="A -> R (in Ref. 1; AAA33907)"
FT /evidence="ECO:0000305"
FT CONFLICT 99
FT /note="A -> R (in Ref. 1; AAA33907)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 136 AA; 15268 MW; F1FB03A849777A61 CRC64;
MARTKQTARK STGGKAPRKQ LATKAARKSA PATGGVKKPH RFRPGTVALR EIRKYQKSTE
LLIRKLPFQR LVREIAQDFK TDLRFQSSAV AALQEAAEAY LVGLFEDTNL CAIHAKRVTI
MPKDIQLARR IRGERA
