HD3A_ORYSJ
ID HD3A_ORYSJ Reviewed; 179 AA.
AC Q93WI9; B5UA60; Q8H2G1;
DT 13-JUL-2010, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Protein HEADING DATE 3A;
DE AltName: Full=FT-like protein A;
GN Name=HD3A; OrderedLocusNames=Os06g0157700, LOC_Os06g06320;
GN ORFNames=OsJ_20191, P0046E09.30, P0702F05.10;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], AND FUNCTION.
RC STRAIN=cv. Nipponbare;
RX PubMed=12407188; DOI=10.1093/pcp/pcf156;
RA Kojima S., Takahashi Y., Kobayashi Y., Monna L., Sasaki T., Araki T.,
RA Yano M.;
RT "Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to
RT flowering downstream of Hd1 under short-day conditions.";
RL Plant Cell Physiol. 43:1096-1105(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Koshihikari;
RX PubMed=18723891; DOI=10.1534/genetics.108.090126;
RA Koide Y., Ikenaga M., Sawamura N., Nishimoto D., Matsubara K., Onishi K.,
RA Kanazawa A., Sano Y.;
RT "The evolution of sex-independent transmission ratio distortion involving
RT multiple allelic interactions at a single locus in rice.";
RL Genetics 180:409-420(2008).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Taichung 65;
RX PubMed=19298266; DOI=10.1111/j.1365-294x.2009.04119.x;
RA Hagiwara W.E., Uwatoko N., Sasaki A., Matsubara K., Nagano H., Onishi K.,
RA Sano Y.;
RT "Diversification in flowering time due to tandem FT-like gene duplication,
RT generating novel Mendelian factors in wild and cultivated rice.";
RL Mol. Ecol. 18:1537-1549(2009).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [8]
RP FUNCTION, TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=17446351; DOI=10.1126/science.1141753;
RA Tamaki S., Matsuo S., Wong H.L., Yokoi S., Shimamoto K.;
RT "Hd3a protein is a mobile flowering signal in rice.";
RL Science 316:1033-1036(2007).
RN [9]
RP FUNCTION.
RX PubMed=18223202; DOI=10.1242/dev.008631;
RA Komiya R., Ikegami A., Tamaki S., Yokoi S., Shimamoto K.;
RT "Hd3a and RFT1 are essential for flowering in rice.";
RL Development 135:767-774(2008).
RN [10]
RP FUNCTION.
RX PubMed=19762423; DOI=10.1242/dev.040170;
RA Komiya R., Yokoi S., Shimamoto K.;
RT "A gene network for long-day flowering activates RFT1 encoding a mobile
RT flowering signal in rice.";
RL Development 136:3443-3450(2009).
CC -!- FUNCTION: Probable mobile flower-promoting signal (florigen) that moves
CC from the leaf to the shoot apical meristem (SAM) and induces flowering.
CC Promotes the transition from vegetative growth to flowering downstream
CC of HD1 and EHD1 under short day (SD) conditions. Acts upstream of
CC MADS14 and MADS15. {ECO:0000269|PubMed:12407188,
CC ECO:0000269|PubMed:17446351, ECO:0000269|PubMed:18223202,
CC ECO:0000269|PubMed:19762423}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in the inner region of the SAM, stem and
CC leaf blade vascular tissues (at protein level).
CC {ECO:0000269|PubMed:17446351}.
CC -!- INDUCTION: Expressed with a circadian rhythm showing a peak at dawn and
CC then decreasing to reach the lowest levels early in the night in SD
CC conditions. {ECO:0000269|PubMed:17446351}.
CC -!- SIMILARITY: Belongs to the phosphatidylethanolamine-binding protein
CC family. {ECO:0000305}.
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DR EMBL; AB052942; BAB61028.1; -; Genomic_DNA.
DR EMBL; AB052944; BAB61030.1; -; mRNA.
DR EMBL; AB433508; BAG72285.1; -; Genomic_DNA.
DR EMBL; AB433509; BAG72286.1; -; Genomic_DNA.
DR EMBL; AB426880; BAH30243.1; -; Genomic_DNA.
DR EMBL; AB426883; BAH30246.1; -; Genomic_DNA.
DR EMBL; AP005828; BAC21280.1; -; Genomic_DNA.
DR EMBL; AP007223; BAD69431.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18774.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS96252.1; -; Genomic_DNA.
DR EMBL; CM000143; EAZ35889.1; -; Genomic_DNA.
DR RefSeq; XP_015641951.1; XM_015786465.1.
DR PDB; 3AXY; X-ray; 2.40 A; A/B/G/H=6-170.
DR PDBsum; 3AXY; -.
DR AlphaFoldDB; Q93WI9; -.
DR BMRB; Q93WI9; -.
DR SMR; Q93WI9; -.
DR BioGRID; 809222; 1.
DR STRING; 4530.OS06T0157700-00; -.
DR PaxDb; Q93WI9; -.
DR PRIDE; Q93WI9; -.
DR EnsemblPlants; Os06t0157700-01; Os06t0157700-01; Os06g0157700.
DR GeneID; 4340185; -.
DR Gramene; Os06t0157700-01; Os06t0157700-01; Os06g0157700.
DR KEGG; osa:4340185; -.
DR eggNOG; KOG3346; Eukaryota.
DR HOGENOM; CLU_043994_6_1_1; -.
DR InParanoid; Q93WI9; -.
DR OMA; EFKHWVV; -.
DR OrthoDB; 1557122at2759; -.
DR PlantReactome; R-OSA-8934036; Long day regulated expression of florigens.
DR PlantReactome; R-OSA-8934108; Short day regulated expression of florigens.
DR PlantReactome; R-OSA-9609102; Flower development.
DR EvolutionaryTrace; Q93WI9; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000007752; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR ExpressionAtlas; Q93WI9; baseline and differential.
DR Genevisible; Q93WI9; OS.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0008429; F:phosphatidylethanolamine binding; ISS:Gramene.
DR GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0010229; P:inflorescence development; IMP:UniProtKB.
DR GO; GO:0009909; P:regulation of flower development; IMP:UniProtKB.
DR GO; GO:0048510; P:regulation of timing of transition from vegetative to reproductive phase; IMP:UniProtKB.
DR GO; GO:0048572; P:short-day photoperiodism; IMP:Gramene.
DR GO; GO:0048575; P:short-day photoperiodism, flowering; IMP:UniProtKB.
DR GO; GO:0010228; P:vegetative to reproductive phase transition of meristem; IBA:GO_Central.
DR CDD; cd00866; PEBP_euk; 1.
DR Gene3D; 3.90.280.10; -; 1.
DR InterPro; IPR031095; FT.
DR InterPro; IPR008914; PEBP.
DR InterPro; IPR036610; PEBP-like_sf.
DR InterPro; IPR035810; PEBP_euk.
DR InterPro; IPR001858; Phosphatidylethanolamine-bd_CS.
DR PANTHER; PTHR11362; PTHR11362; 1.
DR PANTHER; PTHR11362:SF113; PTHR11362:SF113; 1.
DR Pfam; PF01161; PBP; 1.
DR SUPFAM; SSF49777; SSF49777; 1.
DR PROSITE; PS01220; PBP; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Cytoplasm; Developmental protein; Differentiation; Flowering;
KW Nucleus; Reference proteome.
FT CHAIN 1..179
FT /note="Protein HEADING DATE 3A"
FT /id="PRO_0000395304"
FT CONFLICT 145
FT /note="N -> K (in Ref. 2; BAG72286/BAG72285)"
FT /evidence="ECO:0000305"
FT HELIX 10..13
FT /evidence="ECO:0007829|PDB:3AXY"
FT HELIX 16..19
FT /evidence="ECO:0007829|PDB:3AXY"
FT STRAND 30..34
FT /evidence="ECO:0007829|PDB:3AXY"
FT HELIX 47..49
FT /evidence="ECO:0007829|PDB:3AXY"
FT STRAND 50..52
FT /evidence="ECO:0007829|PDB:3AXY"
FT STRAND 55..58
FT /evidence="ECO:0007829|PDB:3AXY"
FT STRAND 66..73
FT /evidence="ECO:0007829|PDB:3AXY"
FT STRAND 86..96
FT /evidence="ECO:0007829|PDB:3AXY"
FT HELIX 101..103
FT /evidence="ECO:0007829|PDB:3AXY"
FT STRAND 104..108
FT /evidence="ECO:0007829|PDB:3AXY"
FT STRAND 120..128
FT /evidence="ECO:0007829|PDB:3AXY"
FT HELIX 146..152
FT /evidence="ECO:0007829|PDB:3AXY"
FT STRAND 159..166
FT /evidence="ECO:0007829|PDB:3AXY"
SQ SEQUENCE 179 AA; 19839 MW; 1BCD0FE33EAFD26D CRC64;
MAGSGRDRDP LVVGRVVGDV LDAFVRSTNL KVTYGSKTVS NGCELKPSMV THQPRVEVGG
NDMRTFYTLV MVDPDAPSPS DPNLREYLHW LVTDIPGTTA ASFGQEVMCY ESPRPTMGIH
RLVFVLFQQL GRQTVYAPGW RQNFNTKDFA ELYNLGSPVA AVYFNCQREA GSGGRRVYP
