HD5_ORYSJ
ID HD5_ORYSJ Reviewed; 297 AA.
AC Q0J7P4;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=Nuclear transcription factor Y subunit B-11 {ECO:0000305};
DE Short=OsNF-YB11 {ECO:0000303|PubMed:26542958};
DE AltName: Full=Protein DAYS TO HEADING 8 {ECO:0000303|PubMed:20566706};
DE AltName: Full=Protein HEADING DATE 5 {ECO:0000303|Ref.1};
DE AltName: Full=Transcriptional activator HAP3H {ECO:0000305};
DE Short=OsHAP3H {ECO:0000303|PubMed:18193457};
GN Name=HD5;
GN Synonyms=DTH8 {ECO:0000303|PubMed:20566706},
GN GHD8 {ECO:0000303|PubMed:21148627}, HAP3H {ECO:0000303|PubMed:18193457},
GN NFYB11 {ECO:0000305};
GN OrderedLocusNames=Os08g0174500 {ECO:0000312|EMBL:BAF23021.1},
GN LOC_Os08g07740 {ECO:0000305};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
RC STRAIN=cv. Nipponbare;
RA Yamanouchi U., Nonoue Y., Ashikari M., Lin H.X., Sasaki T., Yano M.;
RT "Hd5, a QTL controlling photoperiod sensitivity of rice, encodes a CAAT-box
RT binding transcription factor.";
RL Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=18193457; DOI=10.1007/s00438-007-0312-3;
RA Thirumurugan T., Ito Y., Kubo T., Serizawa A., Kurata N.;
RT "Identification, characterization and interaction of HAP family genes in
RT rice.";
RL Mol. Genet. Genomics 279:279-289(2008).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, SUBCELLULAR LOCATION, AND
RP DISRUPTION PHENOTYPE.
RC STRAIN=cv. Asominori;
RX PubMed=20566706; DOI=10.1104/pp.110.156943;
RA Wei X., Xu J., Guo H., Jiang L., Chen S., Yu C., Zhou Z., Hu P., Zhai H.,
RA Wan J.;
RT "DTH8 suppresses flowering in rice, influencing plant height and yield
RT potential simultaneously.";
RL Plant Physiol. 153:1747-1758(2010).
RN [4]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Arroz da Terra, cv. Dunghung Shali, cv. Hoshinoyume, and
RC cv. Italica Livorno;
RX PubMed=23090144; DOI=10.1007/s00122-012-2005-5;
RA Fujino K., Yamanouchi U., Yano M.;
RT "Roles of the Hd5 gene controlling heading date for adaptation to the
RT northern limits of rice cultivation.";
RL Theor. Appl. Genet. 126:611-618(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [7]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [8]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=21148627; DOI=10.1093/mp/ssq070;
RA Yan W.H., Wang P., Chen H.X., Zhou H.J., Li Q.P., Wang C.R., Ding Z.H.,
RA Zhang Y.S., Yu S.B., Xing Y.Z., Zhang Q.F.;
RT "A major QTL, Ghd8, plays pleiotropic roles in regulating grain
RT productivity, plant height, and heading date in rice.";
RL Mol. Plant 4:319-330(2011).
RN [9]
RP INTERACTION WITH NFYC2; NFYC4 AND NFYC6, SUBCELLULAR LOCATION, AND
RP INDUCTION.
RX PubMed=26542958; DOI=10.1007/s00425-015-2426-x;
RA Kim S.K., Park H.Y., Jang Y.H., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.;
RT "OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions
RT in rice.";
RL Planta 243:563-576(2016).
CC -!- FUNCTION: Probable transcription factor involved in the regulation of
CC flowering time under long day (LD) conditions. Functions as repressor
CC of flowering, independently of HD1 and GHD7. Controls flowering time by
CC negatively regulating the expression of EHD1 and HD3A (PubMed:20566706,
CC PubMed:21148627). Regulates plant height by promoting cell elongation
CC in the internodes (PubMed:20566706). Component of the NF-Y/HAP
CC transcription factor complex (By similarity). {ECO:0000250,
CC ECO:0000269|PubMed:20566706, ECO:0000269|PubMed:21148627}.
CC -!- SUBUNIT: Heterotrimeric transcription factor composed of three
CC components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and
CC dimerize for NF-YA association and DNA binding (By similarity).
CC Interacts with NFYC2, NFYC4 and NFYC6 (PubMed:26542958). {ECO:0000250,
CC ECO:0000269|PubMed:26542958}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:20566706,
CC ECO:0000269|PubMed:26542958}. Cytoplasm {ECO:0000269|PubMed:26542958}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, culms, nodes, leaf blades, leaf
CC sheaths and young panicles. {ECO:0000269|PubMed:20566706}.
CC -!- INDUCTION: Circadian-regulation under long day (LD) conditions.
CC Expression increases in the middle of daytime, peaks around the end of
CC the light period and gradually decreases during the dark period and
CC beginning of daylight. {ECO:0000269|PubMed:26542958}.
CC -!- DISRUPTION PHENOTYPE: Early flowering phenotype under long day (LD) and
CC natural day (ND) conditions. Decreased plant size, number of grains per
CC panicle, yield and dry weight per plant. {ECO:0000269|PubMed:20566706,
CC ECO:0000269|PubMed:21148627}.
CC -!- SIMILARITY: Belongs to the NFYB/HAP3 subunit family. {ECO:0000305}.
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DR EMBL; AB124650; BAF34522.1; -; Genomic_DNA.
DR EMBL; AB124651; BAF34523.1; -; mRNA.
DR EMBL; AB288039; BAF64447.1; -; Genomic_DNA.
DR EMBL; HM775396; ADK62361.1; -; Genomic_DNA.
DR EMBL; AB693200; BAL45947.1; -; Genomic_DNA.
DR EMBL; AB693202; BAL45949.1; -; Genomic_DNA.
DR EMBL; AB693203; BAL45950.1; -; Genomic_DNA.
DR EMBL; AB693204; BAL45951.1; -; Genomic_DNA.
DR EMBL; AP005164; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP008214; BAF23021.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT04049.1; -; Genomic_DNA.
DR RefSeq; XP_015649101.1; XM_015793615.1.
DR PDB; 6R0L; X-ray; 2.70 A; A=60-147.
DR PDB; 7C9O; X-ray; 2.55 A; B=54-147.
DR PDB; 7C9P; X-ray; 2.00 A; A/C=54-147.
DR PDBsum; 6R0L; -.
DR PDBsum; 7C9O; -.
DR PDBsum; 7C9P; -.
DR AlphaFoldDB; Q0J7P4; -.
DR SMR; Q0J7P4; -.
DR STRING; 4530.OS08T0174500-00; -.
DR PaxDb; Q0J7P4; -.
DR PRIDE; Q0J7P4; -.
DR EnsemblPlants; Os08t0174500-01; Os08t0174500-01; Os08g0174500.
DR GeneID; 4344784; -.
DR Gramene; Os08t0174500-01; Os08t0174500-01; Os08g0174500.
DR KEGG; osa:4344784; -.
DR eggNOG; KOG0869; Eukaryota.
DR HOGENOM; CLU_066247_0_0_1; -.
DR InParanoid; Q0J7P4; -.
DR OrthoDB; 1529111at2759; -.
DR PlantReactome; R-OSA-8934108; Short day regulated expression of florigens.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR ExpressionAtlas; Q0J7P4; baseline and differential.
DR GO; GO:0016602; C:CCAAT-binding factor complex; IBA:GO_Central.
DR GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0048579; P:negative regulation of long-day photoperiodism, flowering; IMP:UniProtKB.
DR GO; GO:0051512; P:positive regulation of unidimensional cell growth; IMP:UniProtKB.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.10.20.10; -; 1.
DR InterPro; IPR003958; CBFA_NFYB_domain.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR027113; Transc_fact_NFYB/HAP3.
DR InterPro; IPR003956; Transcrpt_fac_NFYB/HAP3_CS.
DR PANTHER; PTHR11064; PTHR11064; 1.
DR Pfam; PF00808; CBFD_NFYB_HMF; 1.
DR SUPFAM; SSF47113; SSF47113; 1.
DR PROSITE; PS00685; NFYB_HAP3; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Cytoplasm; DNA-binding; Flowering; Growth regulation;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..297
FT /note="Nuclear transcription factor Y subunit B-11"
FT /id="PRO_0000437431"
FT DNA_BIND 63..69
FT /evidence="ECO:0000250"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 90..101
FT /note="Subunit association domain (SAD)"
FT /evidence="ECO:0000250"
FT HELIX 65..74
FT /evidence="ECO:0007829|PDB:7C9P"
FT HELIX 84..111
FT /evidence="ECO:0007829|PDB:7C9P"
FT STRAND 115..117
FT /evidence="ECO:0007829|PDB:7C9P"
FT HELIX 119..128
FT /evidence="ECO:0007829|PDB:7C9P"
FT HELIX 132..146
FT /evidence="ECO:0007829|PDB:7C9P"
SQ SEQUENCE 297 AA; 29811 MW; 75C28923F19A63B8 CRC64;
MKSRKSYGHL LSPVGSPPLD NESGEAAAAA AAGGGGCGSS AGYVVYGGGG GGDSPAKEQD
RFLPIANVSR IMKRSLPANA KISKESKETV QECVSEFISF VTGEASDKCQ REKRKTINGD
DLLWAMTTLG FEAYVGPLKS YLNRYREAEG EKADVLGGAG GAAAARHGEG GCCGGGGGGA
DGVVIDGHYP LAGGLSHSHH GHQQQDGGGD VGLMMGGGDA GVGYNAGAGS TTTAFYAPAA
TAASGNKAYC GGDGSRVMEF EGIGGEEESG GGGGGGERGF AGHLHGVQWF RLKRNTN
