HEM3_MYCLE
ID HEM3_MYCLE Reviewed; 315 AA.
AC Q49808; Q49818; Q9CB59;
DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot.
DT 27-APR-2001, sequence version 2.
DT 03-AUG-2022, entry version 126.
DE RecName: Full=Porphobilinogen deaminase;
DE Short=PBG;
DE EC=2.5.1.61;
DE AltName: Full=Hydroxymethylbilane synthase;
DE Short=HMBS;
DE AltName: Full=Pre-uroporphyrinogen synthase;
GN Name=hemC; OrderedLocusNames=ML2421; ORFNames=B2168_C1_179, B2168_C3_262;
OS Mycobacterium leprae (strain TN).
OC Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
OC Mycobacterium.
OX NCBI_TaxID=272631;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RA Smith D.R., Robison K.;
RL Submitted (MAR-1994) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TN;
RX PubMed=11234002; DOI=10.1038/35059006;
RA Cole S.T., Eiglmeier K., Parkhill J., James K.D., Thomson N.R.,
RA Wheeler P.R., Honore N., Garnier T., Churcher C.M., Harris D.E.,
RA Mungall K.L., Basham D., Brown D., Chillingworth T., Connor R.,
RA Davies R.M., Devlin K., Duthoy S., Feltwell T., Fraser A., Hamlin N.,
RA Holroyd S., Hornsby T., Jagels K., Lacroix C., Maclean J., Moule S.,
RA Murphy L.D., Oliver K., Quail M.A., Rajandream M.A., Rutherford K.M.,
RA Rutter S., Seeger K., Simon S., Simmonds M., Skelton J., Squares R.,
RA Squares S., Stevens K., Taylor K., Whitehead S., Woodward J.R.,
RA Barrell B.G.;
RT "Massive gene decay in the leprosy bacillus.";
RL Nature 409:1007-1011(2001).
CC -!- FUNCTION: Tetrapolymerization of the monopyrrole PBG into the
CC hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
CC {ECO:0000250}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=H2O + 4 porphobilinogen = hydroxymethylbilane + 4 NH4(+);
CC Xref=Rhea:RHEA:13185, ChEBI:CHEBI:15377, ChEBI:CHEBI:28938,
CC ChEBI:CHEBI:57845, ChEBI:CHEBI:58126; EC=2.5.1.61;
CC -!- COFACTOR:
CC Name=dipyrromethane; Xref=ChEBI:CHEBI:60342; Evidence={ECO:0000250};
CC Note=Binds 1 dipyrromethane group covalently. {ECO:0000250};
CC -!- PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX
CC biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 2/4.
CC -!- SUBUNIT: Monomer. {ECO:0000250}.
CC -!- MISCELLANEOUS: The porphobilinogen subunits are added to the
CC dipyrromethane group. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the HMBS family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAA17244.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAC31937.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; U00018; AAA17223.1; -; Genomic_DNA.
DR EMBL; U00018; AAA17244.1; ALT_INIT; Genomic_DNA.
DR EMBL; AL583925; CAC31937.1; ALT_INIT; Genomic_DNA.
DR PIR; A87212; A87212.
DR PIR; S72887; S72887.
DR PIR; S72908; S72908.
DR RefSeq; WP_041323398.1; NC_002677.1.
DR AlphaFoldDB; Q49808; -.
DR SMR; Q49808; -.
DR STRING; 272631.ML2421; -.
DR EnsemblBacteria; CAC31937; CAC31937; CAC31937.
DR KEGG; mle:ML2421; -.
DR Leproma; ML2421; -.
DR eggNOG; COG0181; Bacteria.
DR HOGENOM; CLU_019704_1_0_11; -.
DR UniPathway; UPA00251; UER00319.
DR Proteomes; UP000000806; Chromosome.
DR GO; GO:0004418; F:hydroxymethylbilane synthase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0018160; P:peptidyl-pyrromethane cofactor linkage; IEA:InterPro.
DR GO; GO:0006782; P:protoporphyrinogen IX biosynthetic process; IEA:UniProtKB-UniPathway.
DR Gene3D; 3.30.160.40; -; 1.
DR HAMAP; MF_00260; Porphobil_deam; 1.
DR InterPro; IPR000860; HemC.
DR InterPro; IPR022419; Porphobilin_deaminase_cofac_BS.
DR InterPro; IPR022417; Porphobilin_deaminase_N.
DR InterPro; IPR022418; Porphobilinogen_deaminase_C.
DR InterPro; IPR036803; Porphobilinogen_deaminase_C_sf.
DR PANTHER; PTHR11557; PTHR11557; 1.
DR Pfam; PF01379; Porphobil_deam; 1.
DR Pfam; PF03900; Porphobil_deamC; 1.
DR PIRSF; PIRSF001438; 4pyrrol_synth_OHMeBilane_synth; 1.
DR PRINTS; PR00151; PORPHBDMNASE.
DR SUPFAM; SSF54782; SSF54782; 1.
DR TIGRFAMs; TIGR00212; hemC; 1.
DR PROSITE; PS00533; PORPHOBILINOGEN_DEAM; 1.
PE 3: Inferred from homology;
KW Porphyrin biosynthesis; Reference proteome; Transferase.
FT CHAIN 1..315
FT /note="Porphobilinogen deaminase"
FT /id="PRO_0000142958"
FT MOD_RES 234
FT /note="S-(dipyrrolylmethanemethyl)cysteine"
FT /evidence="ECO:0000250"
FT CONFLICT 169
FT /note="L -> P (in Ref. 1; AAA17223)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 315 AA; 32523 MW; 64685F2D970D3882 CRC64;
MIRIGTRGSL LATTQAALVR DALIANGHPA ELVIVNTAGD QSSASIDSLG VGVFTTALRA
AIEEGCVDAA VHSYKDLPTA DDPRFTVAAI PPRNDPRDAV VTRDELVLAE LPAGSLVGTS
SPRRAAQLRA LGLGLEIRPL RGNLDTRLNR VSSGDLDAIV VARAGLARLG RLDEVTETLD
PVQMVPAPAQ GAIAVECRAG DSRLVAVLAA LDDADTRAAV TAERVLLAEL EAGCSAPVGA
IAQVVESIDG EGRVFEELSL RGCVAALDGS DVIRASGIST SGRASELGLA VAVELFELGA
RELMWGARSD RARGS