HEMA_I49A1
ID HEMA_I49A1 Reviewed; 561 AA.
AC Q0A448;
DT 06-MAR-2007, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 02-JUN-2021, entry version 83.
DE RecName: Full=Hemagglutinin {ECO:0000255|HAMAP-Rule:MF_04072};
DE Contains:
DE RecName: Full=Hemagglutinin HA1 chain {ECO:0000255|HAMAP-Rule:MF_04072};
DE Contains:
DE RecName: Full=Hemagglutinin HA2 chain {ECO:0000255|HAMAP-Rule:MF_04072};
DE Flags: Precursor;
GN Name=HA {ECO:0000255|HAMAP-Rule:MF_04072};
OS Influenza A virus (strain A/Duck/Germany/1949 H10N7).
OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina;
OC Insthoviricetes; Articulavirales; Orthomyxoviridae; Alphainfluenzavirus.
OX NCBI_TaxID=382838;
OH NCBI_TaxID=8782; Aves.
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RX PubMed=16439620; DOI=10.1126/science.1121586;
RA Obenauer J.C., Denson J., Mehta P.K., Su X., Mukatira S., Finkelstein D.B.,
RA Xu X., Wang J., Ma J., Fan Y., Rakestraw K.M., Webster R.G., Hoffmann E.,
RA Krauss S., Zheng J., Zhang Z., Naeve C.W.;
RT "Large-scale sequence analysis of avian influenza isolates.";
RL Science 311:1576-1580(2006).
CC -!- FUNCTION: Binds to sialic acid-containing receptors on the cell
CC surface, bringing about the attachment of the virus particle to the
CC cell. This attachment induces virion internalization either through
CC clathrin-dependent endocytosis or through clathrin- and caveolin-
CC independent pathway. Plays a major role in the determination of host
CC range restriction and virulence. Class I viral fusion protein.
CC Responsible for penetration of the virus into the cell cytoplasm by
CC mediating the fusion of the membrane of the endocytosed virus particle
CC with the endosomal membrane. Low pH in endosomes induces an
CC irreversible conformational change in HA2, releasing the fusion
CC hydrophobic peptide. Several trimers are required to form a competent
CC fusion pore. {ECO:0000255|HAMAP-Rule:MF_04072}.
CC -!- SUBUNIT: Homotrimer of disulfide-linked HA1-HA2. {ECO:0000255|HAMAP-
CC Rule:MF_04072}.
CC -!- SUBCELLULAR LOCATION: Virion membrane {ECO:0000255|HAMAP-
CC Rule:MF_04072}; Single-pass type I membrane protein {ECO:0000255|HAMAP-
CC Rule:MF_04072}. Host apical cell membrane {ECO:0000255|HAMAP-
CC Rule:MF_04072}; Single-pass type I membrane protein {ECO:0000255|HAMAP-
CC Rule:MF_04072}. Note=Targeted to the apical plasma membrane in
CC epithelial polarized cells through a signal present in the
CC transmembrane domain. Associated with glycosphingolipid- and
CC cholesterol-enriched detergent-resistant lipid rafts.
CC {ECO:0000255|HAMAP-Rule:MF_04072}.
CC -!- PTM: Palmitoylated. {ECO:0000255|HAMAP-Rule:MF_04072}.
CC -!- PTM: In natural infection, inactive HA is matured into HA1 and HA2
CC outside the cell by one or more trypsin-like, arginine-specific
CC endoprotease secreted by the bronchial epithelial cells. One identified
CC protease that may be involved in this process is secreted in lungs by
CC Clara cells. {ECO:0000255|HAMAP-Rule:MF_04072}.
CC -!- MISCELLANEOUS: Major glycoprotein, comprises over 80% of the envelope
CC proteins present in virus particle.
CC -!- MISCELLANEOUS: The extent of infection into host organism is determined
CC by HA. Influenza viruses bud from the apical surface of polarized
CC epithelial cells (e.g. bronchial epithelial cells) into lumen of lungs
CC and are therefore usually pneumotropic. The reason is that HA is
CC cleaved by tryptase clara which is restricted to lungs. However, HAs of
CC H5 and H7 pantropic avian viruses subtypes can be cleaved by furin and
CC subtilisin-type enzymes, allowing the virus to grow in other organs
CC than lungs.
CC -!- MISCELLANEOUS: The influenza A genome consist of 8 RNA segments.
CC Genetic variation of hemagglutinin and/or neuraminidase genes results
CC in the emergence of new influenza strains. The mechanism of variation
CC can be the result of point mutations or the result of genetic
CC reassortment between segments of two different strains. {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the influenza viruses hemagglutinin family.
CC {ECO:0000255|HAMAP-Rule:MF_04072}.
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DR EMBL; CY014671; ABI84534.1; -; Genomic_RNA.
DR PDB; 4D00; X-ray; 2.50 A; A/C/E=18-340.
DR PDBsum; 4D00; -.
DR SMR; Q0A448; -.
DR UniLectin; Q0A448; -.
DR ABCD; Q0A448; 1 sequenced antibody.
DR PRO; PR:Q0A448; -.
DR Proteomes; UP000008217; Genome.
DR GO; GO:0020002; C:host cell plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0019031; C:viral envelope; IEA:UniProtKB-UniRule.
DR GO; GO:0055036; C:virion membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0046789; F:host cell surface receptor binding; IEA:UniProtKB-UniRule.
DR GO; GO:0075512; P:clathrin-dependent endocytosis of virus by host cell; IEA:UniProtKB-UniRule.
DR GO; GO:0039654; P:fusion of virus membrane with host endosome membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0019064; P:fusion of virus membrane with host plasma membrane; IEA:InterPro.
DR GO; GO:0046761; P:viral budding from plasma membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-KW.
DR Gene3D; 3.90.209.20; -; 1.
DR HAMAP; MF_04072; INFV_HEMA; 1.
DR InterPro; IPR008980; Capsid_hemagglutn.
DR InterPro; IPR013828; Hemagglutn_HA1_a/b_dom_sf.
DR InterPro; IPR000149; Hemagglutn_influenz_A.
DR InterPro; IPR001364; Hemagglutn_influenz_A/B.
DR Pfam; PF00509; Hemagglutinin; 1.
DR PRINTS; PR00330; HEMAGGLUTN1.
DR PRINTS; PR00329; HEMAGGLUTN12.
DR SUPFAM; SSF49818; SSF49818; 1.
PE 1: Evidence at protein level;
KW 3D-structure;
KW Clathrin- and caveolin-independent endocytosis of virus by host;
KW Clathrin-mediated endocytosis of virus by host; Disulfide bond;
KW Fusion of virus membrane with host endosomal membrane;
KW Fusion of virus membrane with host membrane; Glycoprotein; Hemagglutinin;
KW Host cell membrane; Host membrane; Host-virus interaction; Lipoprotein;
KW Membrane; Palmitate; Signal; Transmembrane; Transmembrane helix;
KW Viral attachment to host cell; Viral envelope protein;
KW Viral penetration into host cytoplasm; Virion; Virus endocytosis by host;
KW Virus entry into host cell.
FT SIGNAL 1..16
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT CHAIN 17..561
FT /note="Hemagglutinin"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT /id="PRO_0000440384"
FT CHAIN 18..339
FT /note="Hemagglutinin HA1 chain"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT /id="PRO_5000138801"
FT CHAIN 341..561
FT /note="Hemagglutinin HA2 chain"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT /id="PRO_5000138802"
FT TOPO_DOM 17..524
FT /note="Extracellular"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT TRANSMEM 525..545
FT /note="Helical"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT TOPO_DOM 546..561
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT SITE 340..341
FT /note="Cleavage; by host"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT LIPID 557
FT /note="S-palmitoyl cysteine; by host"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT LIPID 560
FT /note="S-palmitoyl cysteine; by host"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT CARBOHYD 29
FT /note="N-linked (GlcNAc...) asparagine; by host"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT CARBOHYD 45
FT /note="N-linked (GlcNAc...) asparagine; by host"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT CARBOHYD 252
FT /note="N-linked (GlcNAc...) asparagine; by host"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT CARBOHYD 422
FT /note="N-linked (GlcNAc...) asparagine; by host"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT CARBOHYD 494
FT /note="N-linked (GlcNAc...) asparagine; by host"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT DISULFID 21..477
FT /note="Interchain (between HA1 and HA2 chains)"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT DISULFID 59..287
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT DISULFID 71..83
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT DISULFID 104..147
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT DISULFID 291..315
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT DISULFID 484..488
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04072"
FT STRAND 18..25
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 31..33
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 41..44
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 46..48
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 55..60
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 65..67
FT /evidence="ECO:0007829|PDB:4D00"
FT HELIX 73..78
FT /evidence="ECO:0007829|PDB:4D00"
FT HELIX 81..86
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 87..90
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 92..96
FT /evidence="ECO:0007829|PDB:4D00"
FT HELIX 112..119
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 123..129
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 138..142
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 144..149
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 152..154
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 159..166
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 174..179
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 182..184
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 186..194
FT /evidence="ECO:0007829|PDB:4D00"
FT HELIX 198..205
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 212..215
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 220..223
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 239..247
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 252..259
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 261..270
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 275..278
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 283..288
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 290..293
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 301..305
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 311..314
FT /evidence="ECO:0007829|PDB:4D00"
FT STRAND 325..327
FT /evidence="ECO:0007829|PDB:4D00"
SQ SEQUENCE 561 AA; 62207 MW; D44AF065EE796445 CRC64;
MYKVVVIIAL LGAVKGLDRI CLGHHAVANG TIVKTLTNEQ EEVTNATETV ESTNLNKLCM
KGRSYKDLGN CHPVGMLIGT PVCDPHLTGT WDTLIERENA IAHCYPGATI NEEALRQKIM
ESGGISKMST GFTYGSSINS AGTTKACMRN GGDSFYAELK WLVSKTKGQN FPQTTNTYRN
TDTAEHLIIW GIHHPSSTQE KNDLYGTQSL SISVESSTYQ NNFVPVVGAR PQVNGQSGRI
DFHWTLVQPG DNITFSHNGG LIAPSRVSKL TGRGLGIQSE ALIDNSCESK CFWRGGSINT
KLPFQNLSPR TVGQCPKYVN QRSLLLATGM RNVPEVVQGR GLFGAIAGFI ENGWEGMVDG
WYGFRHQNAQ GTGQAADYKS TQAAIDQITG KLNRLIEKTN TEFESIESEF SETEHQIGNV
INWTKDSITD IWTYQAELLV AMENQHTIDM ADSEMLNLYE RVRKQLRQNA EEDGKGCFEI
YHTCDDSCME SIRNNTYDHS QYREEALLNR LNINSVKLSS GYKDIILWFS FGASCFVLLA
VVMGLVFFCL KNGNMRCTIC I
