HFC2A_ORYSJ
ID HFC2A_ORYSJ Reviewed; 298 AA.
AC Q6EUG4; B7EZE1;
DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 16-AUG-2004, sequence version 1.
DT 25-MAY-2022, entry version 124.
DE RecName: Full=Heat stress transcription factor C-2a;
DE AltName: Full=Heat stress transcription factor 5;
DE Short=OsHsf-05;
GN Name=HSFC2A; Synonyms=HSF05;
GN OrderedLocusNames=Os02g0232000, LOC_Os02g13800; ORFNames=OJ1705_E12.15;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15625403; DOI=10.1007/bf02712120;
RA Baniwal S.K., Bharti K., Chan K.Y., Fauth M., Ganguli A., Kotak S.,
RA Mishra S.K., Nover L., Port M., Scharf K.-D., Tripp J., Weber C.,
RA Zielinski D., von Koskull-Doering P.;
RT "Heat stress response in plants: a complex game with chaperones and more
RT than twenty heat stress transcription factors.";
RL J. Biosci. 29:471-487(2004).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18407058; DOI=10.1016/s1673-8527(08)60016-8;
RA Guo J., Wu J., Ji Q., Wang C., Luo L., Yuan Y., Wang Y., Wang J.;
RT "Genome-wide analysis of heat shock transcription factor families in rice
RT and Arabidopsis.";
RL J. Genet. Genomics 35:105-118(2008).
CC -!- FUNCTION: Transcriptional regulator that specifically binds DNA of heat
CC shock promoter elements (HSE). {ECO:0000250}.
CC -!- SUBUNIT: Homotrimer. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- DOMAIN: The hydrophobic-rich region (HR-A/B) corresponds to the
CC oligomerization domain.
CC -!- PTM: Exhibits temperature-dependent phosphorylation. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the HSF family. Class C subfamily.
CC {ECO:0000305}.
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DR EMBL; AP004070; BAD27705.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF08284.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS77784.1; -; Genomic_DNA.
DR EMBL; AK106488; BAG97738.1; -; mRNA.
DR RefSeq; XP_015623571.1; XM_015768085.1.
DR AlphaFoldDB; Q6EUG4; -.
DR SMR; Q6EUG4; -.
DR STRING; 4530.OS02T0232000-01; -.
DR PaxDb; Q6EUG4; -.
DR PRIDE; Q6EUG4; -.
DR EnsemblPlants; Os02t0232000-01; Os02t0232000-01; Os02g0232000.
DR GeneID; 4328809; -.
DR Gramene; Os02t0232000-01; Os02t0232000-01; Os02g0232000.
DR KEGG; osa:4328809; -.
DR eggNOG; KOG0627; Eukaryota.
DR HOGENOM; CLU_030308_6_1_1; -.
DR InParanoid; Q6EUG4; -.
DR OMA; GVDYPPA; -.
DR OrthoDB; 1154048at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6EUG4; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0034605; P:cellular response to heat; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.10.10.10; -; 1.
DR InterPro; IPR000232; HSF_DNA-bd.
DR InterPro; IPR027725; HSF_fam.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR10015; PTHR10015; 1.
DR Pfam; PF00447; HSF_DNA-bind; 1.
DR PRINTS; PR00056; HSFDOMAIN.
DR SMART; SM00415; HSF; 1.
DR SUPFAM; SSF46785; SSF46785; 1.
DR PROSITE; PS00434; HSF_DOMAIN; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Phosphoprotein; Reference proteome; Stress response;
KW Transcription; Transcription regulation.
FT CHAIN 1..298
FT /note="Heat stress transcription factor C-2a"
FT /id="PRO_0000350843"
FT REGION 105..128
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 145..181
FT /note="Hydrophobic repeat HR-A/B"
FT MOTIF 213..216
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
SQ SEQUENCE 298 AA; 31919 MW; 7FA45607D5306116 CRC64;
MTTTTAEGGG GVAPFVAKTY RMVDDPATDG VIAWGRDSNS FVVADPFAFS QTLLPAHFKH
SNFSSFVRQL NTYGFRKVDP DRWEFAHVSF LRGQTHLLRR IVRRSSGGGG AKRKEEAGGC
GGGGEAAAGD VDEESAVVAL EVARLRREQR EIEGRVAAMW RRVQETERRP KQMLAFLVKV
VGDPQVLRRL VDRDNTNAAA SNADDSAVHH QVKRPRLLLD SSSTTTTHGD RHLVTAAADG
FYAGGCGPEA AAAAAFVPDD AVDFTGLYTG GDGFGNAVVD AGVDYPPAYA FPVVDSGY
