HIRA_ORYSJ
ID HIRA_ORYSJ Reviewed; 975 AA.
AC Q652L2; A0A0P0XR75;
DT 21-AUG-2007, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 124.
DE RecName: Full=Protein HIRA;
DE AltName: Full=Histone regulator protein;
GN OrderedLocusNames=Os09g0567700, LOC_Os09g39420;
GN ORFNames=OJ1003_C09.2, OJ1155_H10.34, OsJ_029198;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Histone chaperone involved in maintining knox genes silencing
CC throughout leaf development. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the WD repeat HIR1 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AK065913; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AP005546; BAD46207.1; -; Genomic_DNA.
DR EMBL; AP005558; BAD46255.1; -; Genomic_DNA.
DR EMBL; AP008215; BAF25878.1; -; Genomic_DNA.
DR EMBL; AP014965; BAT09479.1; -; Genomic_DNA.
DR EMBL; CM000146; EAZ45715.1; -; Genomic_DNA.
DR EMBL; AK065913; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015612035.1; XM_015756549.1.
DR AlphaFoldDB; Q652L2; -.
DR SMR; Q652L2; -.
DR STRING; 4530.OS09T0567700-01; -.
DR PaxDb; Q652L2; -.
DR PRIDE; Q652L2; -.
DR EnsemblPlants; Os09t0567700-01; Os09t0567700-01; Os09g0567700.
DR GeneID; 4347889; -.
DR Gramene; Os09t0567700-01; Os09t0567700-01; Os09g0567700.
DR KEGG; osa:4347889; -.
DR eggNOG; KOG0973; Eukaryota.
DR HOGENOM; CLU_004372_3_0_1; -.
DR InParanoid; Q652L2; -.
DR OMA; RGSWDGD; -.
DR OrthoDB; 685536at2759; -.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000007752; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR Genevisible; Q652L2; OS.
DR GO; GO:0000417; C:HIR complex; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0006336; P:DNA replication-independent chromatin assembly; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR Gene3D; 2.130.10.10; -; 2.
DR InterPro; IPR031120; HIR1.
DR InterPro; IPR011494; Hira.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR001680; WD40_repeat.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR PANTHER; PTHR13831; PTHR13831; 1.
DR Pfam; PF07569; Hira; 1.
DR Pfam; PF00400; WD40; 4.
DR SMART; SM00320; WD40; 6.
DR SUPFAM; SSF50978; SSF50978; 2.
DR PROSITE; PS50082; WD_REPEATS_2; 4.
DR PROSITE; PS50294; WD_REPEATS_REGION; 2.
PE 2: Evidence at transcript level;
KW Chromatin regulator; Coiled coil; Nucleus; Reference proteome; Repeat;
KW Repressor; Transcription; Transcription regulation; WD repeat.
FT CHAIN 1..975
FT /note="Protein HIRA"
FT /id="PRO_0000299134"
FT REPEAT 10..50
FT /note="WD 1"
FT REPEAT 64..103
FT /note="WD 2"
FT REPEAT 123..162
FT /note="WD 3"
FT REPEAT 165..204
FT /note="WD 4"
FT REPEAT 214..256
FT /note="WD 5"
FT REPEAT 259..331
FT /note="WD 6"
FT REPEAT 335..374
FT /note="WD 7"
FT REGION 418..510
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 948..975
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 923..954
FT /evidence="ECO:0000255"
FT COMPBIAS 418..447
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 476..491
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 975 AA; 106583 MW; DA8932741BD71919 CRC64;
MITEKPSWIR HEGLQIFSID IQPGGIRFAT GGGDQKIRIW SMKSVAKDND SDDSSQRLLA
TIRDHFGTVN CVRWAHHGRY LASGSDDQVI QIHERKAGTG TSEFGSGEPP DVENWKVVMT
LRGHTADVVD LNWSPDDSTL ASGSLDNTVH IWSMANGICT AVLRGHSSLV KGVTWDPIGS
FIASQSDDKT VIIWRTSDWS LAHRTEGHWS KSLGSTFFRR LAWSPCGHFI TTTHGFQKPR
HSAPVLERGE WSATFDFLGH NAPVVVVKFN HSMFRKHLSS GQDAKAAPAG WANGASKASS
KEHQPYNVIA IGSQDRTITV WTTASARPLF VAKHFFTQSV VDLSWSPDGY SLFACSLDGS
VATFHFEAKE LGYRLRDAEL DELKKNRYGD VRGRQSNIAE SPAQLLLEEA SAKQSASKKV
SSVQQFQSPP KVSTDAPNPS TSVPNQKAPE ALPEDEKKTA GSTADDINKA PRLSSPVKQR
EYRRPDGRKR IIPEAVGFPS NQDMSNRSQN QGVDFSSLDQ RMILGENGTR PSYSASGNCN
NCGVRERSGI TARTNISESL VIQKASAGAG SDGRLSIEQS GSVVPGSLAS CSSLSIHVFN
KKDNEDSLPV RLEAKPVERS AGDMIGLGGA FSTKETEITC TRGTETLWSD RISAKVTVLA
GNANFWAVGC EDGCLQVYTK CGRRAMPAMM MGSAAVFIDC DECWKLLLVT RRGLMYIWDL
YTRTCVLHDS LASLVTSPDE AAGKDTGTVK VISAKFSRCG SPLVVLASRH AFLYDTSLKC
WLRIADDCFP ASNFASSFSS TQGGELGKLQ IDIGKFMARK PIWSRVTDDG VQTRSHLETQ
LAASLALKSP QEYRQCLLSY IRFLAREADE SRLREVCESF LGPPMGMVDA ASSADLKNPS
WDPDVLGMKK HKLLREDILP SMATNRKVQR LLNEFMDLLS EYEAAETNVE QMDVTPTPPP
PPPAAATEGN NNGAS
