HMG11_ARATH
ID HMG11_ARATH Reviewed; 337 AA.
AC Q9LG02;
DT 02-NOV-2010, integrated into UniProtKB/Swiss-Prot.
DT 31-MAY-2011, sequence version 2.
DT 03-AUG-2022, entry version 117.
DE RecName: Full=Putative high mobility group B protein 11;
DE AltName: Full=Nucleosome/chromatin assembly factor group D 11;
GN Name=HMGB11; Synonyms=NFD11; OrderedLocusNames=At1g55650; ORFNames=F20N2.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- FUNCTION: Binds preferentially DNA with A/T-rich content.
CC {ECO:0000250}.
CC -!- INTERACTION:
CC Q9LG02; Q9LTT3: HMGB10; NbExp=3; IntAct=EBI-15201560, EBI-4473135;
CC Q9LG02; Q9SGS2: HMGB9; NbExp=3; IntAct=EBI-15201560, EBI-4425221;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00267,
CC ECO:0000255|PROSITE-ProRule:PRU00355}.
CC -!- SIMILARITY: Belongs to the HMGB family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF79495.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC002328; AAF79495.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE33278.1; -; Genomic_DNA.
DR PIR; H96598; H96598.
DR RefSeq; NP_175961.1; NM_104441.2.
DR AlphaFoldDB; Q9LG02; -.
DR SMR; Q9LG02; -.
DR BioGRID; 27239; 7.
DR IntAct; Q9LG02; 7.
DR STRING; 3702.AT1G55650.1; -.
DR PaxDb; Q9LG02; -.
DR PRIDE; Q9LG02; -.
DR EnsemblPlants; AT1G55650.1; AT1G55650.1; AT1G55650.
DR GeneID; 842014; -.
DR Gramene; AT1G55650.1; AT1G55650.1; AT1G55650.
DR KEGG; ath:AT1G55650; -.
DR Araport; AT1G55650; -.
DR TAIR; locus:2020517; AT1G55650.
DR eggNOG; KOG0381; Eukaryota.
DR eggNOG; KOG2744; Eukaryota.
DR HOGENOM; CLU_035371_0_0_1; -.
DR InParanoid; Q9LG02; -.
DR OMA; IMHARIP; -.
DR OrthoDB; 39440at2759; -.
DR PRO; PR:Q9LG02; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LG02; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR CDD; cd16872; ARID_HMGB9-like; 1.
DR Gene3D; 1.10.150.60; -; 1.
DR Gene3D; 1.10.30.10; -; 1.
DR InterPro; IPR001606; ARID_dom.
DR InterPro; IPR036431; ARID_dom_sf.
DR InterPro; IPR045303; ARID_HMGB9-like.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR Pfam; PF01388; ARID; 1.
DR Pfam; PF00505; HMG_box; 1.
DR SMART; SM00501; BRIGHT; 1.
DR SMART; SM00398; HMG; 1.
DR SUPFAM; SSF46774; SSF46774; 1.
DR SUPFAM; SSF47095; SSF47095; 1.
DR PROSITE; PS51011; ARID; 1.
DR PROSITE; PS50118; HMG_BOX_2; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..337
FT /note="Putative high mobility group B protein 11"
FT /id="PRO_0000399936"
FT DOMAIN 34..125
FT /note="ARID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00355"
FT DNA_BIND 215..282
FT /note="HMG box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00267"
FT REGION 197..221
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 298..337
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 197..217
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 300..337
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 337 AA; 38049 MW; A07B2BE968396A05 CRC64;
MSTDSSQFEV VPANASALDN DVSSHMSMLY QDIVRNPELF WEMLRDFHES SDKKFKIPIV
GGKSLDLHRL FNEVTSRGGL EKVIKDRRCK EVIDAFNFKT TITNSAFVLR KSYLKMLFEF
EHLYYFQAPL STFWEKEKAL KLLIEKSANR DKDSQELKPG TVITGIIDGK FESGYLISTK
VGSEKLKGML YHISPETKRG KKKAKSSQGD SHKPPKRQRT GYNFFVAEQS VRIKAENAGQ
KVSSPKNFGN MWTNLSESDR KVYYEKSRED GKRYKMEILQ YRSLMESRVA EIVAATDAGT
SASAAETADE ASQENLAKTD ACTSASSAAE TEDEVSQ
