HOX10_ORYSJ
ID HOX10_ORYSJ Reviewed; 839 AA.
AC Q6TAQ6; B7ET29; Q70PQ5; Q8H7U9;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Homeobox-leucine zipper protein HOX10;
DE AltName: Full=HD-ZIP protein HOX10;
DE AltName: Full=Homeodomain transcription factor HOX10;
DE AltName: Full=OsHB1;
DE AltName: Full=OsHox10;
GN Name=HOX10; Synonyms=HB1; OrderedLocusNames=Os03g0109400, LOC_Os03g01890;
GN ORFNames=OsJ_008792, OSJNBb0043C10.12;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Shen W.-B., Yang L., Mo L.-X., Xu L.-L.;
RT "Molecular cloning of Oryza sativa homeodomain leucine-zipper protein Hox10
RT gene as well as the bioinformatics analysis.";
RL Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 374-824.
RA Duan K.;
RT "A HD-ZIP homeobox gene involves in rice seed development.";
RL Submitted (APR-2003) to the EMBL/GenBank/DDBJ databases.
RN [9]
RP INDUCTION.
RX PubMed=17804793; DOI=10.1073/pnas.0704339104;
RA Nagasaki H., Itoh J., Hayashi K., Hibara K., Satoh-Nagasawa N., Nosaka M.,
RA Mukouhata M., Ashikari M., Kitano H., Matsuoka M., Nagato Y., Sato Y.;
RT "The small interfering RNA production pathway is required for shoot
RT meristem initiation in rice.";
RL Proc. Natl. Acad. Sci. U.S.A. 104:14867-14871(2007).
RN [10]
RP TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17999151; DOI=10.1007/s11103-007-9255-7;
RA Agalou A., Purwantomo S., Oevernaes E., Johannesson H., Zhu X., Estiati A.,
RA de Kam R.J., Engstroem P., Slamet-Loedin I.H., Zhu Z., Wang M., Xiong L.,
RA Meijer A.H., Ouwerkerk P.B.F.;
RT "A genome-wide survey of HD-Zip genes in rice and analysis of drought-
RT responsive family members.";
RL Plant Mol. Biol. 66:87-103(2008).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and
CC panicles. {ECO:0000269|PubMed:17999151}.
CC -!- INDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM)
CC region of devoloping embryo. {ECO:0000269|PubMed:17804793}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class III subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAN61485.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=EAZ25309.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY425991; AAR04340.1; -; mRNA.
DR EMBL; AC105733; AAN61485.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000009; ABF93574.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF10621.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS81903.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ25309.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AK102378; BAG95526.1; -; mRNA.
DR EMBL; AJ556802; CAD89206.1; -; mRNA.
DR RefSeq; XP_015632709.1; XM_015777223.1.
DR RefSeq; XP_015632710.1; XM_015777224.1.
DR AlphaFoldDB; Q6TAQ6; -.
DR SMR; Q6TAQ6; -.
DR STRING; 4530.OS03T0109400-02; -.
DR PaxDb; Q6TAQ6; -.
DR PRIDE; Q6TAQ6; -.
DR EnsemblPlants; Os03t0109400-02; Os03t0109400-02; Os03g0109400.
DR GeneID; 4331345; -.
DR Gramene; Os03t0109400-02; Os03t0109400-02; Os03g0109400.
DR KEGG; osa:4331345; -.
DR eggNOG; ENOG502QRJM; Eukaryota.
DR HOGENOM; CLU_012517_0_0_1; -.
DR InParanoid; Q6TAQ6; -.
DR OMA; IPLAHTV; -.
DR OrthoDB; 165228at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q6TAQ6; baseline and differential.
DR Genevisible; Q6TAQ6; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 3.30.530.20; -; 1.
DR InterPro; IPR044830; HD-Zip_III.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR013978; MEKHLA.
DR InterPro; IPR023393; START-like_dom_sf.
DR InterPro; IPR002913; START_lipid-bd_dom.
DR PANTHER; PTHR45950; PTHR45950; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF08670; MEKHLA; 1.
DR Pfam; PF01852; START; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00234; START; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS50848; START; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..839
FT /note="Homeobox-leucine zipper protein HOX10"
FT /id="PRO_0000331693"
FT DOMAIN 155..383
FT /note="START"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00197"
FT DNA_BIND 24..87
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 132..157
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 91..134
FT /evidence="ECO:0000255"
FT CONFLICT 677
FT /note="S -> P (in Ref. 8; CAD89206)"
FT /evidence="ECO:0000305"
FT CONFLICT 778
FT /note="K -> R (in Ref. 8; CAD89206)"
FT /evidence="ECO:0000305"
FT CONFLICT 821
FT /note="A -> T (in Ref. 8; CAD89206)"
FT /evidence="ECO:0000305"
FT CONFLICT 824
FT /note="S -> T (in Ref. 8; CAD89206)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 839 AA; 91829 MW; B03D7E7E93F1D173 CRC64;
MAAAVAMRGS SSDGGGYDKV SGMDSGKYVR YTPEQVEALE RVYADCPKPT SSRRQQLLRE
CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL
VHENAHMRQQ LQNTPLANDT SCESNVTTPQ NPLRDASNPS GLLSIAEETL TEFLSKATGT
AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVVEILKD RPSWFRDCRN
LEVFTMIPAG NGGTVELVYT QLYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG
GPSAASAQQY VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA
QKMTTAALRH IRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSIMG
GDGVEDVVIA CNSTKKIRSN SNAGIAFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE
WADYNIDAYL ASTLKTSACS LTGLRPMRFS GSQIIIPLAH TVENEEILEV VRLEGQPLTH
DEALLSRDIH LLQLCTGIDE KSVGSSFQLV FAPIDDFPDE TPLISSGFRV IPLDMKTDGA
SSGRTLDLAS SLEVGSATAQ ASGDASADDC NLRSVLTIAF QFPYELHLQD SVAAMARQYV
RSIVSAVQRV SMAISPSQTG LNAGQRIISG FPEAATLARW VCQSYHYHLG VELLSQSDGD
AEQLLKMLWH YQDAILCCSF KEKPVFTFAN KAGLDMLETS LVALQDLTLD RIFDEPGKEA
LFSNIPKLME QGHVYLPSGV CMSGMGRHVS FDQAVAWKVL AEDSNVHCLA FCFVNWSFV
