HOX16_ORYSJ
ID HOX16_ORYSJ Reviewed; 343 AA.
AC Q6YWR4; B7F510; Q6Q502; Q6Q7E3;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 127.
DE RecName: Full=Homeobox-leucine zipper protein HOX16;
DE AltName: Full=HD-ZIP protein HOX16;
DE AltName: Full=Homeodomain transcription factor HOX16;
DE AltName: Full=OsHox16;
GN Name=HOX16; OrderedLocusNames=Os02g0729700, LOC_Os02g49700;
GN ORFNames=OsJ_007974, OSJNBa0072H09.24, P0617A09.3;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, GENE FAMILY, AND
RP NOMENCLATURE.
RC STRAIN=cv. Nipponbare;
RX PubMed=17999151; DOI=10.1007/s11103-007-9255-7;
RA Agalou A., Purwantomo S., Oevernaes E., Johannesson H., Zhu X., Estiati A.,
RA de Kam R.J., Engstroem P., Slamet-Loedin I.H., Zhu Z., Wang M., Xiong L.,
RA Meijer A.H., Ouwerkerk P.B.F.;
RT "A genome-wide survey of HD-Zip genes in rice and analysis of drought-
RT responsive family members.";
RL Plant Mol. Biol. 66:87-103(2008).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths and
CC blades and panicles. {ECO:0000269|PubMed:17999151}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class I subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAS68137.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=AAS68137.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=AAS83417.1; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=AAS83417.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305};
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DR EMBL; AY554029; AAS83417.1; ALT_SEQ; mRNA.
DR EMBL; AY559045; AAS68137.1; ALT_SEQ; mRNA.
DR EMBL; AP004888; BAD15915.1; -; Genomic_DNA.
DR EMBL; AP005751; BAD16354.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09922.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS80732.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ24491.1; -; Genomic_DNA.
DR EMBL; AK119592; BAG99707.1; -; mRNA.
DR RefSeq; XP_015626253.1; XM_015770767.1.
DR AlphaFoldDB; Q6YWR4; -.
DR SMR; Q6YWR4; -.
DR STRING; 4530.OS02T0729700-01; -.
DR PaxDb; Q6YWR4; -.
DR PRIDE; Q6YWR4; -.
DR EnsemblPlants; Os02t0729700-01; Os02t0729700-01; Os02g0729700.
DR EnsemblPlants; Os02t0729700-02; Os02t0729700-02; Os02g0729700.
DR GeneID; 4330610; -.
DR Gramene; Os02t0729700-01; Os02t0729700-01; Os02g0729700.
DR Gramene; Os02t0729700-02; Os02t0729700-02; Os02g0729700.
DR KEGG; osa:4330610; -.
DR eggNOG; KOG0483; Eukaryota.
DR HOGENOM; CLU_060842_2_0_1; -.
DR InParanoid; Q6YWR4; -.
DR OMA; HMLEKSF; -.
DR OrthoDB; 1066903at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6YWR4; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IBA:GO_Central.
DR CDD; cd00086; homeodomain; 1.
DR InterPro; IPR045224; HDZip_class_I_plant.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR000047; HTH_motif.
DR InterPro; IPR003106; Leu_zip_homeo.
DR PANTHER; PTHR24326; PTHR24326; 1.
DR Pfam; PF02183; HALZ; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR PRINTS; PR00031; HTHREPRESSR.
DR SMART; SM00389; HOX; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Homeobox; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..343
FT /note="Homeobox-leucine zipper protein HOX16"
FT /id="PRO_0000331705"
FT DNA_BIND 74..133
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 132..176
FT /note="Leucine-zipper"
FT REGION 218..239
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 343 AA; 37614 MW; 32DCF732F20A3EFC CRC64;
MESGRLIFST AGSGAGQMLF LDCGAGGGGV GGGAMFHRGA RPVLGMEEGG RGVKRPFFTT
PDELLEEEYY DEQLPEKKRR LTPEQVHLLE RSFEEENKLE PERKTELARK LGLQPRQVAV
WFQNRRARWK TKQLERDFDR LKASFDALRA DHDALLQDNH RLHSQVMSLT EKLQEKETTT
EGSAGAAVDV PGLPAAADVK VAVPDAEEPA LEEAAAAFEE QQEQQVKAED RLSTGSGGSA
VVDTDAQLVV GCGRQHLAAV DSSVESYFPG GDEYHDCVMG PMDHAAGGIQ SEEDDGAGSD
EGCSYYADDA GVLFADHGHH HHHQHADDDE EDGQQISCWW MWN
