HOX24_ORYSJ
ID HOX24_ORYSJ Reviewed; 261 AA.
AC Q6H6S3;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 19-JUL-2004, sequence version 1.
DT 25-MAY-2022, entry version 118.
DE RecName: Full=Homeobox-leucine zipper protein HOX24;
DE AltName: Full=HD-ZIP protein HOX24;
DE AltName: Full=Homeodomain transcription factor HOX24;
DE AltName: Full=OsHox24;
GN Name=HOX24; OrderedLocusNames=Os02g0649300, LOC_Os02g43330;
GN ORFNames=P0048B08.20;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP TISSUE SPECIFICITY, INDUCTION, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17999151; DOI=10.1007/s11103-007-9255-7;
RA Agalou A., Purwantomo S., Oevernaes E., Johannesson H., Zhu X., Estiati A.,
RA de Kam R.J., Engstroem P., Slamet-Loedin I.H., Zhu Z., Wang M., Xiong L.,
RA Meijer A.H., Ouwerkerk P.B.F.;
RT "A genome-wide survey of HD-Zip genes in rice and analysis of drought-
RT responsive family members.";
RL Plant Mol. Biol. 66:87-103(2008).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots and panicles.
CC {ECO:0000269|PubMed:17999151}.
CC -!- INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class I subfamily.
CC {ECO:0000305}.
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DR EMBL; AP004868; BAD25576.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09496.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS80041.1; -; Genomic_DNA.
DR EMBL; AK063685; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015624138.1; XM_015768652.1.
DR AlphaFoldDB; Q6H6S3; -.
DR SMR; Q6H6S3; -.
DR STRING; 4530.OS02T0649300-01; -.
DR PaxDb; Q6H6S3; -.
DR PRIDE; Q6H6S3; -.
DR EnsemblPlants; Os02t0649300-01; Os02t0649300-01; Os02g0649300.
DR GeneID; 4330155; -.
DR Gramene; Os02t0649300-01; Os02t0649300-01; Os02g0649300.
DR KEGG; osa:4330155; -.
DR eggNOG; KOG0483; Eukaryota.
DR HOGENOM; CLU_071718_1_0_1; -.
DR InParanoid; Q6H6S3; -.
DR OMA; WDTWPLL; -.
DR OrthoDB; 1348461at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR ExpressionAtlas; Q6H6S3; baseline and differential.
DR Genevisible; Q6H6S3; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IBA:GO_Central.
DR CDD; cd00086; homeodomain; 1.
DR InterPro; IPR045224; HDZip_class_I_plant.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR000047; HTH_motif.
DR InterPro; IPR003106; Leu_zip_homeo.
DR PANTHER; PTHR24326; PTHR24326; 1.
DR Pfam; PF02183; HALZ; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR PRINTS; PR00031; HTHREPRESSR.
DR SMART; SM00389; HOX; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Homeobox; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..261
FT /note="Homeobox-leucine zipper protein HOX24"
FT /id="PRO_0000331721"
FT DNA_BIND 61..121
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 42..67
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 120..164
FT /note="Leucine-zipper"
FT REGION 160..188
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 261 AA; 28537 MW; C213455B085C495E CRC64;
MESDCQFLVA PPQPHMYYDT AAAAVDEAQF LRQMVAAADH HAAAAGRGGG DGDGGGGGGG
GGERKRRFTE EQVRSLETTF HARRAKLEPR EKAELARELG LQPRQVAIWF QNKRARWRSK
QIEHDYAALR AQYDALHARV ESLRQEKLAL ADQVDELRGK LNERQDQSGS CDGGGAEGDD
DDKRNSVMNA SSSGLVEEDY VSCLAVPVVD VSEDGSAACG GSSYEYDHHL DYLGGGQLPD
PFCGMPDLWE IWPMVEWNAV A
