HOX29_ORYSI
ID HOX29_ORYSI Reviewed; 861 AA.
AC A2WLR5; A5JPW5;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 29-APR-2008, sequence version 2.
DT 25-MAY-2022, entry version 73.
DE RecName: Full=Homeobox-leucine zipper protein HOX29;
DE AltName: Full=HD-ZIP protein HOX29;
DE AltName: Full=Homeodomain transcription factor HOX29;
DE AltName: Full=OsHox29;
GN Name=HOX29; ORFNames=OsI_000758;
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 235-336, TISSUE SPECIFICITY, GENE FAMILY, AND
RP NOMENCLATURE.
RC STRAIN=cv. Minghui 86;
RX PubMed=17999151; DOI=10.1007/s11103-007-9255-7;
RA Agalou A., Purwantomo S., Oevernaes E., Johannesson H., Zhu X., Estiati A.,
RA de Kam R.J., Engstroem P., Slamet-Loedin I.H., Zhu Z., Wang M., Xiong L.,
RA Meijer A.H., Ouwerkerk P.B.F.;
RT "A genome-wide survey of HD-Zip genes in rice and analysis of drought-
RT responsive family members.";
RL Plant Mol. Biol. 66:87-103(2008).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, stems and leaf blades.
CC {ECO:0000269|PubMed:17999151}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class III subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=EAY72911.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; CM000126; EAY72911.1; ALT_SEQ; Genomic_DNA.
DR EMBL; EF555550; ABQ57291.1; -; mRNA.
DR AlphaFoldDB; A2WLR5; -.
DR SMR; A2WLR5; -.
DR STRING; 39946.A2WLR5; -.
DR Proteomes; UP000007015; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 3.30.530.20; -; 1.
DR InterPro; IPR044830; HD-Zip_III.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR013978; MEKHLA.
DR InterPro; IPR023393; START-like_dom_sf.
DR InterPro; IPR002913; START_lipid-bd_dom.
DR PANTHER; PTHR45950; PTHR45950; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF08670; MEKHLA; 1.
DR Pfam; PF01852; START; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00234; START; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS50848; START; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..861
FT /note="Homeobox-leucine zipper protein HOX29"
FT /id="PRO_0000331729"
FT DOMAIN 162..390
FT /note="START"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00197"
FT DNA_BIND 2..65
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT COILED 57..99
FT /evidence="ECO:0000255"
FT CONFLICT 277
FT /note="P -> L (in Ref. 2; ABQ57291)"
FT /evidence="ECO:0000305"
FT CONFLICT 334
FT /note="G -> V (in Ref. 2; ABQ57291)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 861 AA; 93281 MW; B157B38E046B787C CRC64;
MDASKYVRYT PEQVEALERL YYECPKPSSL RRQQLVRECP ALANVDPKQI KVWFQNRRCR
EKQRKESSRL QALNRKLTAM NKLLMEENDR LQKQVSQLVY DHGRHGVAAA GMMRRVPAFP
PQAAAAAGHQ LATATDTSCE SVVTSGHHHQ QQQHNVVQPP PRDASPAGLM SIAEETLTEF
LSKATGTAVE WLQMPGMKPG PDSIGIIAIS HGCAGVAARA CGLVGMEPAK VAEILKDRPL
WLRDCRSMDV VNVLPAGANG TIELLYMQLY APTTLAPARD FWLLRYTSIL DDGSLVVCER
SLSSKQGGPS MPLVQPFIRG EMLPSGFLIR PSDGGGSVIH IVDHMDLEPW SVPEVVRPLY
ESSAMVAQKI SMAALRYLRQ VAHEDTRSVI TGWGRQPAAL RALSQKLTRG FNEALNGLAD
DGWSVIESDG VDDVCISVNS SKVIGCNATF SSGLPIVSTG VLCAKASMLL QDVSPPSLLQ
FLREHRSQWA DSNLDAFFAS AMKPNFCNLP MSRLGGFSGQ VILPLAHTFE PEEFLEVIKL
GNASNYQDTL VHRDLFLLQM YNGVEESSAG TCSELIFAPI DASFSDDSPL LPSGFRIIPI
DSPLDTSSPN CTLDLASTLE AATPRSRISG VNGGGGTCAA AAASSSSKAV MTIAFQFAFD
GHLQDSVAAM ARQYMRNIIS SVQRIAVALS SSRLVPPGAA AAAAQLSPVT PEAATLPRWI
CQSYRFHFGA ELIKSVDANS SNESILKAVW HHPSAILCCS LKAMPVFTFA NQSGLDMLET
TLVALQDMTL EKVFDDQGRK NLCTELPNIM EQGMACMEGG VCVSSVGRAA SYEKAVAWKV
VDGDGGGAHC ISFMFINWTF L
