HOX29_ORYSJ
ID HOX29_ORYSJ Reviewed; 868 AA.
AC Q5QMZ9; B2DDE8; Q0JPU9; Q6Q4Z8;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 29-APR-2008, sequence version 2.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=Homeobox-leucine zipper protein HOX29;
DE AltName: Full=HD-ZIP protein HOX29;
DE AltName: Full=Homeodomain transcription factor HOX29;
DE AltName: Full=OSHB5;
DE AltName: Full=OsHox29;
GN Name=HOX29; OrderedLocusNames=Os01g0200300, LOC_Os01g10320;
GN ORFNames=B1015E06.7;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND TISSUE SPECIFICITY.
RC STRAIN=cv. Taichung 65; TISSUE=Shoot;
RX PubMed=18567825; DOI=10.1104/pp.108.118679;
RA Itoh J., Hibara K., Sato Y., Nagato Y.;
RT "Developmental role and auxin responsiveness of Class III homeodomain
RT leucine zipper gene family members in rice.";
RL Plant Physiol. 147:1960-1975(2008).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 431-861.
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 468-560, TISSUE SPECIFICITY, GENE FAMILY, AND
RP NOMENCLATURE.
RC STRAIN=cv. Nipponbare;
RX PubMed=17999151; DOI=10.1007/s11103-007-9255-7;
RA Agalou A., Purwantomo S., Oevernaes E., Johannesson H., Zhu X., Estiati A.,
RA de Kam R.J., Engstroem P., Slamet-Loedin I.H., Zhu Z., Wang M., Xiong L.,
RA Meijer A.H., Ouwerkerk P.B.F.;
RT "A genome-wide survey of HD-Zip genes in rice and analysis of drought-
RT responsive family members.";
RL Plant Mol. Biol. 66:87-103(2008).
CC -!- FUNCTION: Probable transcription factor that may be necessary for the
CC proper patterning of vascular bundles. {ECO:0000269|PubMed:18567825}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in phloem. {ECO:0000269|PubMed:17999151,
CC ECO:0000269|PubMed:18567825}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class III subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD73204.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF04229.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB374207; BAG31403.1; -; mRNA.
DR EMBL; AP003197; BAD73204.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008207; BAF04229.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014957; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AK112091; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AY559050; AAS68141.1; -; mRNA.
DR RefSeq; XP_015624690.1; XM_015769204.1.
DR AlphaFoldDB; Q5QMZ9; -.
DR SMR; Q5QMZ9; -.
DR STRING; 4530.OS01T0200300-01; -.
DR PaxDb; Q5QMZ9; -.
DR PRIDE; Q5QMZ9; -.
DR GeneID; 4327348; -.
DR KEGG; osa:4327348; -.
DR eggNOG; ENOG502QPKR; Eukaryota.
DR HOGENOM; CLU_040854_0_0_1; -.
DR InParanoid; Q5QMZ9; -.
DR OrthoDB; 183246at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q5QMZ9; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 3.30.530.20; -; 1.
DR InterPro; IPR044830; HD-Zip_III.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR013978; MEKHLA.
DR InterPro; IPR023393; START-like_dom_sf.
DR InterPro; IPR002913; START_lipid-bd_dom.
DR PANTHER; PTHR45950; PTHR45950; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF08670; MEKHLA; 1.
DR Pfam; PF01852; START; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00234; START; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS50848; START; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..868
FT /note="Homeobox-leucine zipper protein HOX29"
FT /id="PRO_0000331730"
FT DOMAIN 169..397
FT /note="START"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00197"
FT DNA_BIND 9..72
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 150..171
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 64..106
FT /evidence="ECO:0000255"
FT COMPBIAS 150..166
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 494
FT /note="S -> L (in Ref. 6; AK112091)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 868 AA; 93957 MW; B03CD529A96B52DB CRC64;
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGMM
RRVPAFPPQA AAAAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA
EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE
ILKDRPLWLR DCRSMDVVNV LPAGANGTIE LLYMQLYAPT TLAPARDFWL LRYTSILDDG
SLVVCERSLS SKQGGPSMPL VQPFIRGEML PSGFLIRPSD VGGSVIHIVD HMDLEPWSVP
EVVRPLYESS AMVAQKISMA ALRYLRQVAH EDTRSVITGW GRQPAALRAL SQKLTRGFNE
ALNGLADDGW SVIESDGVDD VCISVNSSKV IGCNATFSSG LPIVSTGVLC AKASMLLQDV
SPPSLLQFLR EHRSQWADSN LDAFFASTMK PNFCNLPMSR LGGFSGQVIL PLAHTFEPEE
FLEVIKLGNA SNYQDTLVHR DLFLLQMYNG VEESSAGTCS ELIFAPIDAS FSDDSPLLPS
GFRIIPIDSP LDTSSPNCTL DLASTLEAAT PRSRISGVNG GGGGCAAAAA SSSSKAVMTI
AFQFAFDGHL QDSVAAMARQ YMRNIISSVQ RIAVALSSSR LVPPGAGAAA AQLSPVTPEA
ATLPRWICQS YRFHFGDELI KSVDANSSNE SILKAVWHHP SAILCCSLKA MPVFTFANQS
GLDMLETTLV ALQDMTLEKV FDDQGRKNLC TELPNIMEQG MACMEGGVCV SSVGRAASYE
KAVAWKVVDG DGGGAHCICF MFINWTFL
