HOX32_ORYSJ
ID HOX32_ORYSJ Reviewed; 859 AA.
AC Q6AST1; B7EUE5; Q6Q503;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Homeobox-leucine zipper protein HOX32;
DE AltName: Full=HD-ZIP protein HOX32;
DE AltName: Full=Homeodomain transcription factor HOX32;
DE AltName: Full=OsHox32;
GN Name=HOX32; OrderedLocusNames=Os03g0640800, LOC_Os03g43930;
GN ORFNames=B1394A07.10;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 513-644, TISSUE SPECIFICITY, GENE FAMILY, AND
RP NOMENCLATURE.
RC STRAIN=cv. Nipponbare;
RX PubMed=17999151; DOI=10.1007/s11103-007-9255-7;
RA Agalou A., Purwantomo S., Oevernaes E., Johannesson H., Zhu X., Estiati A.,
RA de Kam R.J., Engstroem P., Slamet-Loedin I.H., Zhu Z., Wang M., Xiong L.,
RA Meijer A.H., Ouwerkerk P.B.F.;
RT "A genome-wide survey of HD-Zip genes in rice and analysis of drought-
RT responsive family members.";
RL Plant Mol. Biol. 66:87-103(2008).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths
CC and blades and panicles. {ECO:0000269|PubMed:17999151}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class III subfamily.
CC {ECO:0000305}.
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DR EMBL; AC147427; AAT85280.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF97828.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12659.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS85427.1; -; Genomic_DNA.
DR EMBL; AK103284; BAG95992.1; -; mRNA.
DR EMBL; AY559044; AAS68136.1; -; Genomic_DNA.
DR RefSeq; XP_015632484.1; XM_015776998.1.
DR AlphaFoldDB; Q6AST1; -.
DR SMR; Q6AST1; -.
DR STRING; 4530.OS03T0640800-01; -.
DR PaxDb; Q6AST1; -.
DR PRIDE; Q6AST1; -.
DR EnsemblPlants; Os03t0640800-01; Os03t0640800-01; Os03g0640800.
DR GeneID; 4333544; -.
DR Gramene; Os03t0640800-01; Os03t0640800-01; Os03g0640800.
DR KEGG; osa:4333544; -.
DR eggNOG; ENOG502QPKR; Eukaryota.
DR HOGENOM; CLU_012517_0_0_1; -.
DR InParanoid; Q6AST1; -.
DR OMA; MCCSVKT; -.
DR OrthoDB; 146876at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q6AST1; baseline and differential.
DR Genevisible; Q6AST1; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 3.30.530.20; -; 1.
DR InterPro; IPR044830; HD-Zip_III.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR013978; MEKHLA.
DR InterPro; IPR023393; START-like_dom_sf.
DR InterPro; IPR002913; START_lipid-bd_dom.
DR PANTHER; PTHR45950; PTHR45950; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF08670; MEKHLA; 1.
DR Pfam; PF01852; START; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00234; START; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS50848; START; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..859
FT /note="Homeobox-leucine zipper protein HOX32"
FT /id="PRO_0000331732"
FT DOMAIN 171..393
FT /note="START"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00197"
FT DNA_BIND 29..92
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 7..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 140..172
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 100..129
FT /evidence="ECO:0000255"
FT COMPBIAS 140..169
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 859 AA; 93462 MW; E37835D085EA928C CRC64;
MAAAMVAAVH GVGRQDRSSP GGGGAPQVDT GKYVRYTPEQ VEALERVYGE CPKPSSLRRQ
QLIRECPILS NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLTAMNKL LMEENDRLQK
QVSRLVYENG YMRQQLHNPS VATTDTSCES VVTSGQHHQQ QNPAATRPQR DANNPAGLLA
IAEETLAEFL SKATGTAVDW VQMVGMKPGP DSIGIIAVSH NCSGVAARAC GLVSLEPTKV
AEILKDRPSW YRDCRCVDVL HVIPTGNGGT IELIYMQTYA PTTLAAPRDF WILRYTSGLE
DGSLVICERS LTQSTGGPSG PNTPNFVRAE VLPSGYLIRP CEGGGSMIHI VDHVDLDAWS
VPEVLRPLYE SPKILAQKMT IAALRHIRQI AHESSGEMPY GGGRQPAVLR TFSQRLSRGF
NDAVNGFPDD GWSLMSSDGA EDVTIAFNSS PNKLVGSHVN SSQLFSAIGG GILCAKASML
LQNVPPALLV RFLREHRSEW ADPGVDAYSA AALRASPYAV PGLRAGGFMG SQVILPLAHT
LEHEEFLEVI RLEGHSLCHD EVVLSRDMYL LQLCSGVDEN AAGACAQLVF APIDESFADD
APLLPSGFRV IPLDGKTDAP SATRTLDLAS TLEVGSGGTT RASSDTSSTC NTRSVLTIAF
QFSYENHLRE SVAAMARQYV RTVVASVQRV AMAIAPSRLG GQIETKNPPG SPEAHTLARW
IGRSYRFHTG ADLLRTDSQS TDSSLKAMWQ HSDSIMCCSL KAAPVFTFAN QAGLDMLETT
LIALQDISLE KILDDDGRKA LCTEFPKIMQ QGFAYLPGGV CVSSMGRPVS YEQAVAWKVL
SDDDTPHCLA FMFVNWSFV
