HOX7_ORYSJ
ID HOX7_ORYSJ Reviewed; 349 AA.
AC Q0E0A6; A0A0P0VKI4; Q6Z7D8;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 25-MAY-2022, entry version 101.
DE RecName: Full=Homeobox-leucine zipper protein HOX7;
DE AltName: Full=HD-ZIP protein HOX7;
DE AltName: Full=Homeodomain transcription factor HOX7;
DE AltName: Full=OsHox7;
GN Name=HOX7; OrderedLocusNames=Os02g0565600, LOC_Os02g35770;
GN ORFNames=P0020C11.33;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP FUNCTION, SUBUNIT, AND TISSUE SPECIFICITY.
RX PubMed=10732669; DOI=10.1007/pl00008671;
RA Meijer A.H., de Kam R.J., d'Erfurth I., Shen W.-B., Hoge J.H.C.;
RT "HD-Zip proteins of families I and II from rice: interactions and
RT functional properties.";
RL Mol. Gen. Genet. 263:12-21(2000).
RN [6]
RP TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17999151; DOI=10.1007/s11103-007-9255-7;
RA Agalou A., Purwantomo S., Oevernaes E., Johannesson H., Zhu X., Estiati A.,
RA de Kam R.J., Engstroem P., Slamet-Loedin I.H., Zhu Z., Wang M., Xiong L.,
RA Meijer A.H., Ouwerkerk P.B.F.;
RT "A genome-wide survey of HD-Zip genes in rice and analysis of drought-
RT responsive family members.";
RL Plant Mol. Biol. 66:87-103(2008).
CC -!- FUNCTION: Probable transcription factor that binds to the DNA sequence
CC 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
CC -!- SUBUNIT: Homodimer (Probable). May form a heterodimer with HOX1, HOX2
CC or HOX3. {ECO:0000269|PubMed:10732669, ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes,
CC internodes, flowers and embryo. {ECO:0000269|PubMed:10732669,
CC ECO:0000269|PubMed:17999151}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class II subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AK064118; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=BAD15830.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP004865; BAD15830.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008208; BAF09082.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS79301.1; -; Genomic_DNA.
DR EMBL; AK064118; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015626174.1; XM_015770688.1.
DR AlphaFoldDB; Q0E0A6; -.
DR SMR; Q0E0A6; -.
DR STRING; 4530.OS02T0565600-01; -.
DR PaxDb; Q0E0A6; -.
DR PRIDE; Q0E0A6; -.
DR EnsemblPlants; Os02t0565600-01; Os02t0565600-01; Os02g0565600.
DR GeneID; 4329705; -.
DR Gramene; Os02t0565600-01; Os02t0565600-01; Os02g0565600.
DR KEGG; osa:4329705; -.
DR eggNOG; KOG0483; Eukaryota.
DR HOGENOM; CLU_049516_2_1_1; -.
DR InParanoid; Q0E0A6; -.
DR OMA; EQDNQKT; -.
DR OrthoDB; 1014909at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q0E0A6; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR003106; Leu_zip_homeo.
DR Pfam; PF02183; HALZ; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR SMART; SM00340; HALZ; 1.
DR SMART; SM00389; HOX; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Homeobox; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..349
FT /note="Homeobox-leucine zipper protein HOX7"
FT /id="PRO_0000331687"
FT DNA_BIND 150..209
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 42..186
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 208..252
FT /note="Leucine-zipper"
FT COMPBIAS 85..103
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 120..136
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 145..177
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 349 AA; 37438 MW; 8A8B5C38E685BCD3 CRC64;
MELELSLGDS PAPVKATIAP TPVLIPTCMG DEEDLELVLG VRATRRDEQD DQTTCTQSSE
EAMEGEEDET RPHGEAPVES LSFPLFVSSA ETGSANSEMC TRGFDVNTRP ADGGAEAGRP
SSPSSMQEAS TRQQVADQEA ADDEDNGGGG ARKKLRLSKE QSSFLEDSFK EHSTLTPKQK
SDLANRLNLR PRQVEVWFQN RRARTKLKQT EVDCEHLKRC CERLTRENRR LQREVAELRG
TLRTTTSSYP PLYGLHHLPA AAGTVFRVCP SCEHSKVVAA AASESFSPRV FAGGGAPAAI
TAAAAVPSPG AGSPPSSSAA LFGARRPHFG PFAAAVIPPV LRRQPSATS
