HOX9_ORYSI
ID HOX9_ORYSI Reviewed; 840 AA.
AC A2Z8L4; A5JPU5;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 29-APR-2008, sequence version 2.
DT 25-MAY-2022, entry version 79.
DE RecName: Full=Homeobox-leucine zipper protein HOX9;
DE AltName: Full=HD-ZIP protein HOX9;
DE AltName: Full=Homeodomain transcription factor HOX9;
DE AltName: Full=OsHB2;
DE AltName: Full=OsHox9;
GN Name=HOX9; Synonyms=HB2; ORFNames=OsI_032907;
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 775-840, TISSUE SPECIFICITY, GENE FAMILY, AND
RP NOMENCLATURE.
RC STRAIN=cv. Minghui 86;
RX PubMed=17999151; DOI=10.1007/s11103-007-9255-7;
RA Agalou A., Purwantomo S., Oevernaes E., Johannesson H., Zhu X., Estiati A.,
RA de Kam R.J., Engstroem P., Slamet-Loedin I.H., Zhu Z., Wang M., Xiong L.,
RA Meijer A.H., Ouwerkerk P.B.F.;
RT "A genome-wide survey of HD-Zip genes in rice and analysis of drought-
RT responsive family members.";
RL Plant Mol. Biol. 66:87-103(2008).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths
CC and blades and panicles. {ECO:0000269|PubMed:17999151}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class III subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=EAY78948.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=EAY78948.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; CM000135; EAY78948.1; ALT_SEQ; Genomic_DNA.
DR EMBL; EF555530; ABQ57271.1; -; mRNA.
DR AlphaFoldDB; A2Z8L4; -.
DR SMR; A2Z8L4; -.
DR STRING; 39946.A2Z8L4; -.
DR Proteomes; UP000007015; Chromosome 10.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 3.30.530.20; -; 1.
DR InterPro; IPR044830; HD-Zip_III.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR013978; MEKHLA.
DR InterPro; IPR023393; START-like_dom_sf.
DR InterPro; IPR002913; START_lipid-bd_dom.
DR PANTHER; PTHR45950; PTHR45950; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF08670; MEKHLA; 1.
DR Pfam; PF01852; START; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00234; START; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS50848; START; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..840
FT /note="Homeobox-leucine zipper protein HOX9"
FT /id="PRO_0000331690"
FT DOMAIN 157..385
FT /note="START"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00197"
FT DNA_BIND 26..89
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 135..160
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 86..135
FT /evidence="ECO:0000255"
SQ SEQUENCE 840 AA; 92178 MW; 0F3EA77C82ED8792 CRC64;
MAAAVAMRSG SGSDGGGGGY DKAGMDSGKY VRYTPEQVEA LERVYAECPK PSSSRRQQLL
RDCPILANIE PKQIKVWFQN RRCRDKQRKE ASRLQAVNRK LTAMNKLLME ENERLQKQVS
QLVHENAYMK QQLQNPSLGN DTSCESNVTT PQNPLRDASN PSGLLTIAEE TLTEFLSKAT
GTAVDWVPMP GMKPGPDSFG IVAVSHGCRG VAARACGLVN LEPTKIVEIL KDRPSWFRDC
RSLEVFTMFP AGNGGTIELV YMQMYAPTTL VPARDFWTLR YTTTMDDGSL VVCERSLSGS
GGGPSTASAQ QFVRAEMLPS GYLVRPCEGG GSIVHIVDHL DLEAWSVPEV LRPLYESSRV
VAQKMTTAAL RHIRQIAQET SGEVVYALGR QPAVLRTFSQ RLSRGFNDAI SGFNDDGWSV
MGGDGIEDVI IACNAKKVRN TSTSANAFVT PGGVICAKAS MLLQSVPPAV LVRFLREHRS
EWADYNFDAY SASSLKTSSC SLPGLRPMRF SGSQIIMPLA HTVENEEILE VVRLEGQALT
HDDGLMSRDI HLLQLCTGID EKSMGSCFQL VFAPIDELFP DDAPLISSGF RVIPLDMKTD
GTPAGRTLDL ASSLEVGSTA QPTGDASMDD CNLRSVLTIA FQFPYEMHLQ DSVATMARQY
VRSIVSSVQR VSMAISPSRS GLNAGQKIIS GFPEAPTLAR WICQSYQFHL GVELLRQADD
AGEALLKMLW DYEDAILCCS FKEKPVFTFA NEMGLNMLET SLVALQDLSL DKIFDEAGRK
ALYNEIPKLM EQGYVYLPGG VCLSGMGRHV SFEQAVAWKV LGEDNNVHCL AFCFVNWSFV
