HPS_BACSU
ID HPS_BACSU Reviewed; 210 AA.
AC P42405; O31477;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 15-JUL-1998, sequence version 2.
DT 03-AUG-2022, entry version 124.
DE RecName: Full=3-hexulose-6-phosphate synthase;
DE Short=HPS;
DE EC=4.1.2.43;
DE AltName: Full=D-arabino-3-hexulose-6-phosphate formaldehyde lyase;
DE AltName: Full=HUMPS;
GN Name=hxlA; Synonyms=yckG; OrderedLocusNames=BSU03460;
OS Bacillus subtilis (strain 168).
OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=224308;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168;
RX PubMed=7704255; DOI=10.1099/13500872-141-2-277;
RA Fujishima Y., Yamane K.;
RT "A 10 kb nucleotide sequence at the 5' flanking region (32 degrees) of
RT srfAA of the Bacillus subtilis chromosome.";
RL Microbiology 141:277-279(1995).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168;
RX PubMed=8969502; DOI=10.1099/13500872-142-11-3047;
RA Yamane K., Kumano M., Kurita K.;
RT "The 25 degrees-36 degrees region of the Bacillus subtilis chromosome:
RT determination of the sequence of a 146 kb segment and identification of 113
RT genes.";
RL Microbiology 142:3047-3056(1996).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9384377; DOI=10.1038/36786;
RA Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA Yoshikawa H., Danchin A.;
RT "The complete genome sequence of the Gram-positive bacterium Bacillus
RT subtilis.";
RL Nature 390:249-256(1997).
RN [4]
RP CHARACTERIZATION.
RC STRAIN=168;
RX PubMed=10572115; DOI=10.1128/jb.181.23.7154-7160.1999;
RA Yasueda H., Kawahara Y., Sugimoto S.;
RT "Bacillus subtilis yckG and yckF encode two key enzymes of the ribulose
RT monophosphate pathway used by methylotrophs, and yckH is required for their
RT expression.";
RL J. Bacteriol. 181:7154-7160(1999).
CC -!- FUNCTION: Catalyzes the condensation of ribulose 5-phosphate with
CC formaldehyde to form 3-hexulose 6-phosphate. Together with HxlB, may
CC act as a formaldehyde detoxification system.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=D-ribulose 5-phosphate + formaldehyde = D-arabino-hex-3-ulose
CC 6-phosphate; Xref=Rhea:RHEA:25201, ChEBI:CHEBI:16842,
CC ChEBI:CHEBI:58121, ChEBI:CHEBI:58542; EC=4.1.2.43;
CC -!- PATHWAY: One-carbon metabolism; formaldehyde assimilation via RuMP
CC pathway; D-fructose 6-phosphate from D-ribulose 5-phosphate and
CC formaldehyde: step 1/2.
CC -!- INDUCTION: By formaldehyde, under the control of HxlR. Not induced by
CC methanol, formate, or methylamine.
CC -!- SIMILARITY: Belongs to the HPS/KGPDC family. HPS subfamily.
CC {ECO:0000305}.
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DR EMBL; D30762; BAA06434.1; -; Genomic_DNA.
DR EMBL; D50453; BAA08980.1; -; Genomic_DNA.
DR EMBL; AL009126; CAB12140.1; -; Genomic_DNA.
DR PIR; A69761; A69761.
DR RefSeq; NP_388228.1; NC_000964.3.
DR RefSeq; WP_003246452.1; NZ_JNCM01000030.1.
DR AlphaFoldDB; P42405; -.
DR SMR; P42405; -.
DR STRING; 224308.BSU03460; -.
DR PaxDb; P42405; -.
DR PRIDE; P42405; -.
DR EnsemblBacteria; CAB12140; CAB12140; BSU_03460.
DR GeneID; 938314; -.
DR KEGG; bsu:BSU03460; -.
DR PATRIC; fig|224308.179.peg.363; -.
DR eggNOG; COG0269; Bacteria.
DR InParanoid; P42405; -.
DR OMA; WMTVICA; -.
DR PhylomeDB; P42405; -.
DR BioCyc; BSUB:BSU03460-MON; -.
DR UniPathway; UPA00294; UER00434.
DR Proteomes; UP000001570; Chromosome.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0043801; F:hexulose-6-phosphate synthase activity; IEA:UniProtKB-EC.
DR GO; GO:0004590; F:orotidine-5'-phosphate decarboxylase activity; IBA:GO_Central.
DR GO; GO:0006207; P:'de novo' pyrimidine nucleobase biosynthetic process; IBA:GO_Central.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:UniProtKB-KW.
DR GO; GO:0019647; P:formaldehyde assimilation via ribulose monophosphate cycle; IEA:UniProtKB-UniPathway.
DR GO; GO:0006730; P:one-carbon metabolic process; IEA:UniProtKB-KW.
DR GO; GO:0009636; P:response to toxic substance; IEA:UniProtKB-KW.
DR CDD; cd04726; KGPDC_HPS; 1.
DR Gene3D; 3.20.20.70; -; 1.
DR InterPro; IPR017553; 3-hexulose-6-phosphate_synth.
DR InterPro; IPR013785; Aldolase_TIM.
DR InterPro; IPR041710; HPS/KGPDC.
DR InterPro; IPR001754; OMPdeCOase_dom.
DR InterPro; IPR011060; RibuloseP-bd_barrel.
DR Pfam; PF00215; OMPdecase; 1.
DR SMART; SM00934; OMPdecase; 1.
DR SUPFAM; SSF51366; SSF51366; 1.
DR TIGRFAMs; TIGR03128; RuMP_HxlA; 1.
PE 1: Evidence at protein level;
KW Carbohydrate metabolism; Detoxification; Lyase; One-carbon metabolism;
KW Reference proteome.
FT CHAIN 1..210
FT /note="3-hexulose-6-phosphate synthase"
FT /id="PRO_0000212101"
FT CONFLICT 114
FT /note="K -> T (in Ref. 1 and 2)"
FT /evidence="ECO:0000305"
FT CONFLICT 166..210
FT /note="GGIKLDTLPEVIQQKPDLVIVGGGITSAADKAETASKMKQLIVQG -> AAS
FT NLIHCQK (in Ref. 1 and 2)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 210 AA; 22572 MW; BA9115BA47CBA846 CRC64;
MELQLALDLV NIPEAIELVK EVEQYIDVVE IGTPVVINEG LRAVKEIKEA FPQLKVLADL
KIMDAGGYEI MKASEAGADI ITVLGATDDA TIKGAVEEAK KQKKKILVDM INVKDIESRA
KEIDALGVDY ICVHTGYDLQ AEGKNSFEEL TTIKNTVKNA KTAIAGGIKL DTLPEVIQQK
PDLVIVGGGI TSAADKAETA SKMKQLIVQG