AP1_VITVI
ID AP1_VITVI Reviewed; 241 AA.
AC Q6E6S7; D1MDP8;
DT 05-JUN-2019, integrated into UniProtKB/Swiss-Prot.
DT 16-AUG-2004, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Agamous-like MADS-box protein AP1 {ECO:0000305};
DE AltName: Full=APETALA1-like protein {ECO:0000303|PubMed:15247405};
DE Short=AP1-like protein {ECO:0000303|PubMed:15247405};
DE Short=VvAP1 {ECO:0000303|PubMed:18997115};
DE Short=VviAP1 {ECO:0000303|PubMed:26818751};
GN Name=AP1 {ECO:0000303|PubMed:15247405};
GN OrderedLocusNames=VIT_01s0011g00100 {ECO:0000312|EMBL:CBI27320.3};
GN ORFNames=VITISV_013455 {ECO:0000312|EMBL:CAN71708.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
RC STRAIN=cv. Tempranillo;
RX PubMed=15247405; DOI=10.1104/pp.104.040832;
RA Calonje M., Cubas P., Martinez-Zapater J.M., Carmona M.J.;
RT "Floral meristem identity genes are expressed during tendril development in
RT grapevine.";
RL Plant Physiol. 135:1491-1501(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Xiangyue; TISSUE=Flower;
RA Fang J.G., Yang G., Song C.N., Wang X.C., Wang C., Zhang X.Y.;
RT "Characterization of seven important genes involved in grapevine flower
RT development.";
RL Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024;
RX PubMed=17721507; DOI=10.1038/nature06148;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir;
RX PubMed=18094749; DOI=10.1371/journal.pone.0001326;
RA Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D.,
RA Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D.,
RA Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.,
RA Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N.,
RA Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A.,
RA Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T.,
RA Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
RA Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J.,
RA Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P.,
RA Gutin A., Van de Peer Y., Salamini F., Viola R.;
RT "A high quality draft consensus sequence of the genome of a heterozygous
RT grapevine variety.";
RL PLoS ONE 2:E1326-E1326(2007).
RN [5]
RP GENE FAMILY.
RX PubMed=18997115; DOI=10.1104/pp.108.131052;
RA Diaz-Riquelme J., Lijavetzky D., Martinez-Zapater J.M., Carmona M.J.;
RT "Genome-wide analysis of MIKCC-type MADS box genes in grapevine.";
RL Plant Physiol. 149:354-369(2009).
RN [6]
RP GENE FAMILY.
RX PubMed=26818751; DOI=10.1186/s12864-016-2398-7;
RA Grimplet J., Martinez-Zapater J.M., Carmona M.J.;
RT "Structural and functional annotation of the MADS-box transcription factor
RT family in grapevine.";
RL BMC Genomics 17:80-80(2016).
CC -!- FUNCTION: Probable transcription factor involved in flower development.
CC {ECO:0000250|UniProtKB:Q0HA25}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00251}.
CC -!- TISSUE SPECIFICITY: Expressed in tendrils and flowers.
CC {ECO:0000269|PubMed:15247405}.
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DR EMBL; AY538746; AAT07447.1; -; mRNA.
DR EMBL; GU133634; ACZ26528.1; -; mRNA.
DR EMBL; FN597015; CBI27320.3; -; Genomic_DNA.
DR EMBL; AM437374; CAN71708.1; -; Genomic_DNA.
DR RefSeq; NP_001268210.1; NM_001281281.1.
DR AlphaFoldDB; Q6E6S7; -.
DR SMR; Q6E6S7; -.
DR STRING; 29760.VIT_01s0011g00100.t01; -.
DR EnsemblPlants; Vitvi01g00008_t001; Vitvi01g00008_P001; Vitvi01g00008.
DR GeneID; 100232952; -.
DR Gramene; Vitvi01g00008_t001; Vitvi01g00008_P001; Vitvi01g00008.
DR KEGG; vvi:100232952; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_2_1; -.
DR InParanoid; Q6E6S7; -.
DR OMA; NYREEAP; -.
DR OrthoDB; 1178730at2759; -.
DR Proteomes; UP000009183; Chromosome 1.
DR ExpressionAtlas; Q6E6S7; baseline.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0010582; P:floral meristem determinacy; IBA:GO_Central.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Flowering; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..241
FT /note="Agamous-like MADS-box protein AP1"
FT /id="PRO_0000447285"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 88..178
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT CONFLICT 134
FT /note="T -> S (in Ref. 2; ACZ26528)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 241 AA; 27992 MW; 1F0E77C10E662AD1 CRC64;
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD
SCMEKILDRY ERYSYAERQL TATDPESQGN WSLEYSKLKA KIELLQRSQR HFLGEDLDSL
SLKELQNLEQ QLDTALKHIR SRKNQLMYES ISELQRKEKA MQEQNNMLAK EIKEKEKTVA
QQTHWEQQNH GLNTSSFLLP QQLPCLNMGG TYQGEAHGAR RNELDLTLEP IYPSHLGCFT
T
