HRDE4_CAEEL
ID HRDE4_CAEEL Reviewed; 545 AA.
AC H2KZ49; C6S3L8;
DT 27-SEP-2017, integrated into UniProtKB/Swiss-Prot.
DT 21-MAR-2012, sequence version 1.
DT 03-AUG-2022, entry version 61.
DE RecName: Full=Protein hrde-4 {ECO:0000305};
DE AltName: Full=Heritable RNAi deficient protein 4 {ECO:0000312|WormBase:T10B11.7a};
GN Name=hrde-4 {ECO:0000303|PubMed:28533440};
GN ORFNames=T10B11.7 {ECO:0000312|WormBase:T10B11.7a};
OS Caenorhabditis elegans.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC Caenorhabditis.
OX NCBI_TaxID=6239 {ECO:0000312|Proteomes:UP000001940};
RN [1] {ECO:0000312|Proteomes:UP000001940}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bristol N2 {ECO:0000312|Proteomes:UP000001940};
RX PubMed=9851916; DOI=10.1126/science.282.5396.2012;
RG The C. elegans sequencing consortium;
RT "Genome sequence of the nematode C. elegans: a platform for investigating
RT biology.";
RL Science 282:2012-2018(1998).
RN [2] {ECO:0000305}
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=28533440; DOI=10.1534/genetics.116.198812;
RA Spracklin G., Fields B., Wan G., Vijayendran D., Wallig A., Shukla A.,
RA Kennedy S.;
RT "Identification and characterization of Caenorhabditis elegans RNAi
RT inheritance machinery.";
RL Genetics 206:1403-1416(2017).
CC -!- FUNCTION: May play a role in transgenerational epigenetic inheritance.
CC {ECO:0000305|PubMed:28533440}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=a {ECO:0000312|WormBase:T10B11.7a};
CC IsoId=H2KZ49-1; Sequence=Displayed;
CC Name=b {ECO:0000312|WormBase:T10B11.7b};
CC IsoId=H2KZ49-2; Sequence=VSP_059070;
CC -!- DISRUPTION PHENOTYPE: Mortal germline (Mrt) phenotype in which there is
CC a progressive decline in fertility with each generation at 25 degrees
CC Celsius. {ECO:0000269|PubMed:28533440}.
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DR EMBL; BX284601; CCD66246.1; -; Genomic_DNA.
DR EMBL; BX284601; CCD66247.1; -; Genomic_DNA.
DR RefSeq; NP_001040682.2; NM_001047217.2. [H2KZ49-1]
DR RefSeq; NP_001040683.2; NM_001047218.2.
DR AlphaFoldDB; H2KZ49; -.
DR IntAct; H2KZ49; 1.
DR STRING; 6239.T10B11.7a; -.
DR PaxDb; H2KZ49; -.
DR EnsemblMetazoa; T10B11.7a.1; T10B11.7a.1; WBGene00020403. [H2KZ49-1]
DR EnsemblMetazoa; T10B11.7b.1; T10B11.7b.1; WBGene00020403. [H2KZ49-2]
DR GeneID; 188371; -.
DR KEGG; cel:CELE_T10B11.7; -.
DR CTD; 188371; -.
DR WormBase; T10B11.7a; CE43751; WBGene00020403; hrde-4. [H2KZ49-1]
DR WormBase; T10B11.7b; CE43803; WBGene00020403; hrde-4. [H2KZ49-2]
DR eggNOG; ENOG502TKB0; Eukaryota.
DR HOGENOM; CLU_536639_0_0_1; -.
DR OrthoDB; 1885114at2759; -.
DR SignaLink; H2KZ49; -.
DR PRO; PR:H2KZ49; -.
DR Proteomes; UP000001940; Chromosome I.
DR Bgee; WBGene00020403; Expressed in embryo and 4 other tissues.
DR GO; GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.
PE 4: Predicted;
KW Alternative splicing; Coiled coil; Reference proteome;
KW RNA-mediated gene silencing.
FT CHAIN 1..545
FT /note="Protein hrde-4"
FT /evidence="ECO:0000305"
FT /id="PRO_0000441623"
FT REGION 108..150
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 236..290
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 430..461
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 493..545
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 325..354
FT /evidence="ECO:0000255"
FT COMPBIAS 120..136
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 236..274
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 430..452
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 493..525
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 529..545
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 1..37
FT /note="Missing (in isoform b)"
FT /evidence="ECO:0000305"
FT /id="VSP_059070"
SQ SEQUENCE 545 AA; 62718 MW; A78155B0CD24C0BA CRC64;
MNTYFRFEWI NGEENPCEYN LWRMFQIEPK PKSGANFMKP NLPNTENFST ASSSKIRQLS
EQPSCSNSYK KLRHEMGSDN SNIDDPLDDY DDRKKKLAKK KAAFKAKKGY TTGQNKSDNS
FEFEVEKSMD RKEPENGDEE ESTEDDYRHA YSSVEKSLRK ISLLPIQRPS HHTFCVFCSE
SYPPVEFHFC IFMTAAQKEV NQSVNEFLGK ADTINKKMLE SLKKFIHTSK VDTIAKHSRM
ENTSMKKNSD SPKKLKRPST DPNPISKRFR HISDESTSSS SLAKNKSRSV TPDALPFAMI
DSQEHRTQSG RVVKRPNLFC HKEVQIRKET VQKEGLKKKR VNKEKEVEQE STILLGISES
ERKRNRNMIR RLLANGFELP GDDYVLPPLP ADKSTWTREQ HKMDIYGPIY CALQSFKPAY
TTDMTSEFLE DDGDTEFKSE NSESDSDSED EQKVENDVAS SADDIEFIEI VEAERKMDQN
LAQQVRSSFV TTAENTENNM LMEDDSSEQG SSKFNRNASR RSTENIEFIT IDDDDDDDND
IEIIA