AP24_ORYSJ
ID AP24_ORYSJ Reviewed; 439 AA.
AC A0A0N7KMH0; Q2TQ35;
DT 16-JAN-2019, integrated into UniProtKB/Swiss-Prot.
DT 16-JAN-2019, sequence version 2.
DT 25-MAY-2022, entry version 39.
DE RecName: Full=APETALA2-like protein 4 {ECO:0000303|PubMed:28066457};
DE AltName: Full=Protein GLOSSY 15 {ECO:0000303|PubMed:26631749};
DE Short=OsGL15 {ECO:0000303|PubMed:26631749};
GN Name=AP2-4 {ECO:0000303|PubMed:28066457};
GN Synonyms=GL15 {ECO:0000303|PubMed:26631749};
GN OrderedLocusNames=LOC_Os06g43220 {ECO:0000305}, Os06g0639200 {ECO:0000305};
GN ORFNames=OSNPB_060639200 {ECO:0000312|EMBL:BAS98793.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 109-360 (ISOFORM 2).
RA Lee J., Lee D.Y., An G.;
RT "The AP2 subfamily genes in rice.";
RL Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP FUNCTION, AND REPRESSION BY MIR172.
RX PubMed=26631749; DOI=10.1073/pnas.1521949112;
RA Wang L., Sun S., Jin J., Fu D., Yang X., Weng X., Xu C., Li X., Xiao J.,
RA Zhang Q.;
RT "Coordinated regulation of vegetative and reproductive branching in rice.";
RL Proc. Natl. Acad. Sci. U.S.A. 112:15504-15509(2015).
RN [5]
RP FUNCTION, REPRESSION BY MIR172, GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Zhonghua 11;
RX PubMed=28066457; DOI=10.3389/fpls.2016.01891;
RA Dai Z., Wang J., Zhu M., Miao X., Shi Z.;
RT "OsMADS1 represses microRNA172 in elongation of palea/lemma development in
RT rice.";
RL Front. Plant Sci. 7:1891-1891(2016).
CC -!- FUNCTION: Probable transcription factor (By similarity). Involved in
CC spikelet transition (Probable). Prevents lemma and palea elongation as
CC well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927,
CC ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
CC -!- SUBUNIT: May form homodimer. {ECO:0000250|UniProtKB:P47927}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00366}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=A0A0N7KMH0-1; Sequence=Displayed;
CC Name=2;
CC IsoId=A0A0N7KMH0-2; Sequence=VSP_059995, VSP_059996;
CC -!- INDUCTION: Target of miR172 microRNA mediated cleavage, particularly
CC during floral organ development. {ECO:0000305|PubMed:26631749,
CC ECO:0000305|PubMed:28066457}.
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. AP2
CC subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAS98793.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP014962; BAS98793.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AY685116; AAW78370.1; -; mRNA.
DR RefSeq; XP_015642711.1; XM_015787225.1. [A0A0N7KMH0-1]
DR RefSeq; XP_015642712.1; XM_015787226.1.
DR AlphaFoldDB; A0A0N7KMH0; -.
DR SMR; A0A0N7KMH0; -.
DR STRING; 4530.OS06T0639200-01; -.
DR PaxDb; A0A0N7KMH0; -.
DR GeneID; 9271266; -.
DR KEGG; osa:9271266; -.
DR eggNOG; ENOG502R1D7; Eukaryota.
DR HOGENOM; CLU_035462_2_0_1; -.
DR OrthoDB; 1044433at2759; -.
DR Proteomes; UP000059680; Chromosome 6.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0009909; P:regulation of flower development; IMP:UniProtKB.
DR GO; GO:0080050; P:regulation of seed development; IMP:UniProtKB.
DR CDD; cd00018; AP2; 1.
DR Gene3D; 3.30.730.10; -; 2.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR Pfam; PF00847; AP2; 2.
DR PRINTS; PR00367; ETHRSPELEMNT.
DR SMART; SM00380; AP2; 2.
DR SUPFAM; SSF54171; SSF54171; 2.
DR PROSITE; PS51032; AP2_ERF; 2.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome; Repeat;
KW Transcription; Transcription regulation.
FT CHAIN 1..439
FT /note="APETALA2-like protein 4"
FT /id="PRO_0000445993"
FT DNA_BIND 90..146
FT /note="AP2/ERF 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT DNA_BIND 182..239
FT /note="AP2/ERF 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT REGION 67..88
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 363..439
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 78..87
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
FT MOTIF 258..262
FT /note="EAR"
FT /evidence="ECO:0000250|UniProtKB:P47927"
FT COMPBIAS 406..439
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 340..366
FT /note="SQVISSSGGGGGSGRQGAAELHMRPRH -> VCMLTDSGVPTLIFLRSRALS
FT RLSYSN (in isoform 2)"
FT /id="VSP_059995"
FT VAR_SEQ 367..439
FT /note="Missing (in isoform 2)"
FT /id="VSP_059996"
SQ SEQUENCE 439 AA; 47647 MW; 676CF04C88FB25A1 CRC64;
MAATFYGVGS IALAMHEDDE EEGSGRVFGF AAGDLVRPAV VTQQLFPMTA AAAAVVPEST
EQRHVAAAAE QWARPPSRKT RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD
TAQAAARAYD QAAIKFRGVE ADINFTLDDY KEDIKKMNNF SKEEFVQVLR RQGAGFVRGS
SRFRGVTLHK CGKWEARIGQ LMGKKYVYLG LYDTEMEAAK AYDKAAIKCC GKEAVTNFDT
QAYEDELNLQ SWDSELDLEL SLGCSGGERA AGEVLHSAPS NQRTSLTFML PEEEEMTACH
RQRSIWARPS LAPAMPDGGA VIRPDQHQHH PSSRNMLLMS QVISSSGGGG GSGRQGAAEL
HMRPRHGWSS GGNNWAPPYA ARPRLPGAED DEDDDSAAAA SSGFPMGQVA TASSPSRPSS
SSCSSRRSST AAATATTGR
