AP2L3_ARATH
ID AP2L3_ARATH Reviewed; 303 AA.
AC A0JPZ8; Q70II2; Q8GYZ5; Q9CA81; Q9MA06;
DT 12-JUN-2007, integrated into UniProtKB/Swiss-Prot.
DT 12-DEC-2006, sequence version 1.
DT 03-AUG-2022, entry version 101.
DE RecName: Full=AP2-like ethylene-responsive transcription factor At1g79700;
GN OrderedLocusNames=At1g79700; ORFNames=F19K16.32, F20B17.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Gong W., Pan Y., Peng X.Y., Yang J., Zhu Y.X.;
RT "Arabidopsis thaliana putative AP2 domain transcription factor, similar to
RT the At1g79700 protein encoded by chromosome 1.";
RL Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16407444; DOI=10.1104/pp.105.073783;
RA Nakano T., Suzuki K., Fujimura T., Shinshi H.;
RT "Genome-wide analysis of the ERF gene family in Arabidopsis and rice.";
RL Plant Physiol. 140:411-432(2006).
CC -!- FUNCTION: Probably acts as a transcriptional activator. Binds to the
CC GCC-box pathogenesis-related promoter element. May be involved in the
CC regulation of gene expression by stress factors and by components of
CC stress signal transduction pathways (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=A0JPZ8-1; Sequence=Displayed;
CC Name=2;
CC IsoId=A0JPZ8-2; Sequence=VSP_026149, VSP_026150;
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. AP2
CC subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF68121.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AJ580379; CAE45641.1; -; mRNA.
DR EMBL; AC010793; AAF68121.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC011717; AAG52255.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE36288.1; -; Genomic_DNA.
DR EMBL; AK117300; BAC41971.1; -; mRNA.
DR EMBL; BT029368; ABK32182.1; -; mRNA.
DR PIR; H96827; H96827.
DR RefSeq; NP_178088.2; NM_106619.3. [A0JPZ8-1]
DR AlphaFoldDB; A0JPZ8; -.
DR SMR; A0JPZ8; -.
DR STRING; 3702.AT1G79700.2; -.
DR PaxDb; A0JPZ8; -.
DR PRIDE; A0JPZ8; -.
DR EnsemblPlants; AT1G79700.1; AT1G79700.1; AT1G79700. [A0JPZ8-1]
DR GeneID; 844309; -.
DR Gramene; AT1G79700.1; AT1G79700.1; AT1G79700. [A0JPZ8-1]
DR KEGG; ath:AT1G79700; -.
DR Araport; AT1G79700; -.
DR eggNOG; ENOG502QUXV; Eukaryota.
DR InParanoid; A0JPZ8; -.
DR PhylomeDB; A0JPZ8; -.
DR PRO; PR:A0JPZ8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; A0JPZ8; baseline and differential.
DR Genevisible; A0JPZ8; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0009873; P:ethylene-activated signaling pathway; IEA:UniProtKB-KW.
DR Gene3D; 3.30.730.10; -; 2.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR Pfam; PF00847; AP2; 1.
DR PRINTS; PR00367; ETHRSPELEMNT.
DR SMART; SM00380; AP2; 2.
DR SUPFAM; SSF54171; SSF54171; 2.
DR PROSITE; PS51032; AP2_ERF; 2.
PE 2: Evidence at transcript level;
KW Activator; Alternative splicing; DNA-binding; Ethylene signaling pathway;
KW Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..303
FT /note="AP2-like ethylene-responsive transcription factor
FT At1g79700"
FT /id="PRO_0000290363"
FT DNA_BIND 52..118
FT /note="AP2/ERF 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT DNA_BIND 154..202
FT /note="AP2/ERF 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT REGION 1..55
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 212..259
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 217..242
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 176..199
FT /note="ATQEEAAIAYDIAAIEYRGLNAVT -> GNKYLYLGTYGISFHYPYFIVIFL
FT (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:11910074"
FT /id="VSP_026149"
FT VAR_SEQ 200..303
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:11910074"
FT /id="VSP_026150"
FT CONFLICT 135
FT /note="E -> G (in Ref. 4; BAC41971)"
FT /evidence="ECO:0000305"
FT CONFLICT 204
FT /note="S -> N (in Ref. 1; CAE45641)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 303 AA; 34238 MW; 60C33852BF8ACF6A CRC64;
MAKVSGRSKK TIVDDEISDK TASASESASI ALTSKRKRKS PPRNAPLQRS SPYRGVTRHR
WTGRYEAHLW DKNSWNDTQT KKGRQVYLGA YDEEEAAARA YDLAALKYWG RDTLLNFPLP
SYDEDVKEME GQSKEEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFATQEE
AAIAYDIAAI EYRGLNAVTN FDVSRYLNPN AAADKADSDS KPIRSPSREP ESSDDNKSPK
SEEVIEPSTS PEVIPTRRSF PDDIQTYFGC QDSGKLATEE DVIFDCFNSY INPGFYNEFD
YGP
