HSFA1_ORYSJ
ID HSFA1_ORYSJ Reviewed; 506 AA.
AC Q84T61;
DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 139.
DE RecName: Full=Heat stress transcription factor A-1;
DE AltName: Full=Heat stress transcription factor 13;
DE Short=OsHsf-13;
DE AltName: Full=Heat stress transcription factor 3;
DE Short=rHsf3;
GN Name=HSFA1; Synonyms=HSF13, HSF3;
GN OrderedLocusNames=Os03g0854500, LOC_Os03g63750;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Yao Q.-H., Peng R.-H., Xiong A.-S.;
RT "Isolation rice heat shock factor by modified yeast one-hybrid system
RT method.";
RL Submitted (JUL-2003) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15625403; DOI=10.1007/bf02712120;
RA Baniwal S.K., Bharti K., Chan K.Y., Fauth M., Ganguli A., Kotak S.,
RA Mishra S.K., Nover L., Port M., Scharf K.-D., Tripp J., Weber C.,
RA Zielinski D., von Koskull-Doering P.;
RT "Heat stress response in plants: a complex game with chaperones and more
RT than twenty heat stress transcription factors.";
RL J. Biosci. 29:471-487(2004).
RN [7]
RP GENE FAMILY, NOMENCLATURE, AND DOMAIN AHA.
RX PubMed=18407058; DOI=10.1016/s1673-8527(08)60016-8;
RA Guo J., Wu J., Ji Q., Wang C., Luo L., Yuan Y., Wang Y., Wang J.;
RT "Genome-wide analysis of heat shock transcription factor families in rice
RT and Arabidopsis.";
RL J. Genet. Genomics 35:105-118(2008).
RN [8]
RP INDUCTION.
RX PubMed=18064488; DOI=10.1007/s00425-007-0670-4;
RA Yokotani N., Ichikawa T., Kondou Y., Matsui M., Hirochika H., Iwabuchi M.,
RA Oda K.;
RT "Expression of rice heat stress transcription factor OsHsfA2e enhances
RT tolerance to environmental stresses in transgenic Arabidopsis.";
RL Planta 227:957-967(2008).
CC -!- FUNCTION: Transcriptional regulator that specifically binds DNA of heat
CC shock promoter elements (HSE). {ECO:0000250}.
CC -!- SUBUNIT: Homotrimer. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
CC -!- DOMAIN: The hydrophobic-rich region (HR-A/B) corresponds to the
CC oligomerization domain. AHA motifs are transcriptional activator
CC elements. {ECO:0000269|PubMed:18407058}.
CC -!- PTM: Exhibits temperature-dependent phosphorylation. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the HSF family. Class A subfamily.
CC {ECO:0000305}.
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DR EMBL; AY344485; AAQ23057.1; -; mRNA.
DR EMBL; AC120506; AAO66547.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF99963.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF13852.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS87428.1; -; Genomic_DNA.
DR RefSeq; XP_015630421.1; XM_015774935.1.
DR AlphaFoldDB; Q84T61; -.
DR SMR; Q84T61; -.
DR STRING; 4530.OS03T0854500-01; -.
DR PaxDb; Q84T61; -.
DR PRIDE; Q84T61; -.
DR EnsemblPlants; Os03t0854500-01; Os03t0854500-01; Os03g0854500.
DR EnsemblPlants; Os03t0854500-02; Os03t0854500-02; Os03g0854500.
DR GeneID; 4334826; -.
DR Gramene; Os03t0854500-01; Os03t0854500-01; Os03g0854500.
DR Gramene; Os03t0854500-02; Os03t0854500-02; Os03g0854500.
DR KEGG; osa:4334826; -.
DR eggNOG; KOG0627; Eukaryota.
DR HOGENOM; CLU_030308_0_0_1; -.
DR InParanoid; Q84T61; -.
DR OMA; MGATNIK; -.
DR OrthoDB; 1154048at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q84T61; baseline and differential.
DR Genevisible; Q84T61; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0034605; P:cellular response to heat; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.10.10.10; -; 1.
DR InterPro; IPR000232; HSF_DNA-bd.
DR InterPro; IPR027725; HSF_fam.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR10015; PTHR10015; 1.
DR Pfam; PF00447; HSF_DNA-bind; 1.
DR PRINTS; PR00056; HSFDOMAIN.
DR SMART; SM00415; HSF; 1.
DR SUPFAM; SSF46785; SSF46785; 1.
DR PROSITE; PS00434; HSF_DOMAIN; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Nucleus; Phosphoprotein; Reference proteome;
KW Stress response; Transcription; Transcription regulation.
FT CHAIN 1..506
FT /note="Heat stress transcription factor A-1"
FT /id="PRO_0000350820"
FT REGION 164..214
FT /note="Hydrophobic repeat HR-A/B"
FT REGION 231..254
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 157..207
FT /evidence="ECO:0000255"
FT MOTIF 239..242
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
FT MOTIF 449..456
FT /note="AHA"
SQ SEQUENCE 506 AA; 55277 MW; 32BC4F38C8B1A3E7 CRC64;
MEAAVAAAAA AAGAVTTAVA PPPGAAVSNG VATAPPPFLM KTYEMVDDPA TDAVVSWGPG
NNSFVVWNTP EFARDLLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL
LKTINRRKPT HGNNQVQQPQ LPAAPVPACV EVGKFGMEEE IEMLKRDKNV LMQELVRLRQ
QQQTTDHQLQ TLGKRLQGME QRQQQMMSFL AKAMHSPGFL AQFVQQNENS RRRIVASNKK
RRLPKQDGSL DSESASLDGQ IVKYQPMINE AAKAMLRKIL KLDSSHRFES MGNSDNFLLE
NYMPNGQGLD SSSSTRNSGV TLAEVPANSG LPYVATSSGL SAICSTSTPQ IQCPVVLDNG
IPKEVPNMSA VPSVPKAVAP GPTDINILEF PDLQDIVAEE NVDIPGGGFE MPGPEGVFSL
PEEGDDSVPI ETDEILYNDD TQKLPAIIDS FWEQFLVASP LSVDNDEVDS GVLDQKETQQ
GNGWTKAENM ANLTEQMGLL SSHHTG
