HSFB1_ORYSJ
ID HSFB1_ORYSJ Reviewed; 302 AA.
AC Q67TP9; B7E6C6;
DT 23-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=Heat stress transcription factor B-1;
DE AltName: Full=Heat stress transcription factor 23;
DE Short=OsHsf-23;
GN Name=HSFB1; Synonyms=HSF23;
GN OrderedLocusNames=Os09g0456800, LOC_Os09g28354, LOC_Os09g28360;
GN ORFNames=B1342C04.35;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=15625403; DOI=10.1007/bf02712120;
RA Baniwal S.K., Bharti K., Chan K.Y., Fauth M., Ganguli A., Kotak S.,
RA Mishra S.K., Nover L., Port M., Scharf K.-D., Tripp J., Weber C.,
RA Zielinski D., von Koskull-Doering P.;
RT "Heat stress response in plants: a complex game with chaperones and more
RT than twenty heat stress transcription factors.";
RL J. Biosci. 29:471-487(2004).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18407058; DOI=10.1016/s1673-8527(08)60016-8;
RA Guo J., Wu J., Ji Q., Wang C., Luo L., Yuan Y., Wang Y., Wang J.;
RT "Genome-wide analysis of heat shock transcription factor families in rice
RT and Arabidopsis.";
RL J. Genet. Genomics 35:105-118(2008).
CC -!- FUNCTION: Transcriptional regulator that specifically binds DNA of heat
CC shock promoter elements (HSE). {ECO:0000250}.
CC -!- SUBUNIT: Homotrimer. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. Nucleus {ECO:0000305}.
CC -!- DOMAIN: The hydrophobic-rich region (HR-A/B) corresponds to the
CC oligomerization domain.
CC -!- PTM: Exhibits temperature-dependent phosphorylation. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the HSF family. Class B subfamily.
CC {ECO:0000305}.
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DR EMBL; AP006057; BAD38472.1; -; Genomic_DNA.
DR EMBL; AP008215; BAF25278.1; -; Genomic_DNA.
DR EMBL; AP014965; BAT08436.1; -; Genomic_DNA.
DR EMBL; AK061433; BAG87923.1; -; mRNA.
DR RefSeq; XP_015611859.1; XM_015756373.1.
DR AlphaFoldDB; Q67TP9; -.
DR SMR; Q67TP9; -.
DR STRING; 4530.OS09T0456800-01; -.
DR PaxDb; Q67TP9; -.
DR PRIDE; Q67TP9; -.
DR EnsemblPlants; Os09t0456800-01; Os09t0456800-01; Os09g0456800.
DR GeneID; 4347259; -.
DR Gramene; Os09t0456800-01; Os09t0456800-01; Os09g0456800.
DR KEGG; osa:4347259; -.
DR eggNOG; KOG0627; Eukaryota.
DR HOGENOM; CLU_030308_3_1_1; -.
DR InParanoid; Q67TP9; -.
DR OMA; IGEPWVS; -.
DR OrthoDB; 1154048at2759; -.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR ExpressionAtlas; Q67TP9; baseline and differential.
DR Genevisible; Q67TP9; OS.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:EnsemblPlants.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0009408; P:response to heat; IEA:EnsemblPlants.
DR Gene3D; 1.10.10.10; -; 1.
DR InterPro; IPR000232; HSF_DNA-bd.
DR InterPro; IPR027725; HSF_fam.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR10015; PTHR10015; 1.
DR Pfam; PF00447; HSF_DNA-bind; 1.
DR PRINTS; PR00056; HSFDOMAIN.
DR SMART; SM00415; HSF; 1.
DR SUPFAM; SSF46785; SSF46785; 1.
DR PROSITE; PS00434; HSF_DOMAIN; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Cytoplasm; DNA-binding; Nucleus; Phosphoprotein;
KW Reference proteome; Stress response; Transcription;
KW Transcription regulation.
FT CHAIN 1..302
FT /note="Heat stress transcription factor B-1"
FT /id="PRO_0000350833"
FT REGION 1..33
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 116..184
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 180..209
FT /note="Hydrophobic repeat HR-A/B"
FT COILED 170..202
FT /evidence="ECO:0000255"
FT MOTIF 211..218
FT /note="Nuclear export signal"
FT /evidence="ECO:0000255"
FT MOTIF 263..267
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255"
FT COMPBIAS 120..134
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 152..184
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 302 AA; 32799 MW; F078E20D61451EF0 CRC64;
MAAAEAAAAV GKQQQKGGGG RGGGGGGPAP FLTKTNQMVE ESATDEVISW GKEGRSFVVW
KPVEFARDLL PLHFKHCNFS SFVRQLNTYG FRKVVPDRWE FANGNFRRGE QGLLSGIRRR
KATTPQSSKS CGSGVNVAFP PPLPPLPPEP SATTSSGNDR SSSSASSPPR ADITSENEQL
RKDNQTLTME LARARRHCEE LLGFLSRFLD VRQLDLRLLM QEDMRAAAGG VGGEQRVQEH
AREEKCVKLF GVLLDDTHGA ATRKRARCEE AAASERPIKM IRIGEPWVSV PSSGPARCGG
DN