AP3_VITVI
ID AP3_VITVI Reviewed; 226 AA.
AC E0CPH4; A3RJI1;
DT 05-JUN-2019, integrated into UniProtKB/Swiss-Prot.
DT 05-OCT-2010, sequence version 1.
DT 03-AUG-2022, entry version 80.
DE RecName: Full=Agamous-like MADS-box protein AP3 {ECO:0000305};
DE AltName: Full=VvAP3.1 {ECO:0000303|PubMed:18997115};
DE AltName: Full=VviAP3a {ECO:0000303|PubMed:26818751};
GN Name=AP3 {ECO:0000303|PubMed:17920788};
GN OrderedLocusNames=VIT_18s0001g13460 {ECO:0000312|EMBL:CBI19790.3};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
RC STRAIN=cv. Cabernet Sauvignon;
RX PubMed=17920788; DOI=10.1016/j.gene.2007.08.005;
RA Poupin M.J., Federici F., Medina C., Matus J.T., Timmermann T.,
RA Arce-Johnson P.;
RT "Isolation of the three grape sub-lineages of B-class MADS-box TM6,
RT PISTILLATA and APETALA3 genes which are differentially expressed during
RT flower and fruit development.";
RL Gene 404:10-24(2007).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Xiangyue; TISSUE=Flower;
RA Fang J.G., Yang G., Song C.N., Wang W.Y., Wang Y.J.;
RT "Characterization of seven important genes involved in grapevine flower
RT development.";
RL Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024;
RX PubMed=17721507; DOI=10.1038/nature06148;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
RN [4]
RP GENE FAMILY.
RX PubMed=18997115; DOI=10.1104/pp.108.131052;
RA Diaz-Riquelme J., Lijavetzky D., Martinez-Zapater J.M., Carmona M.J.;
RT "Genome-wide analysis of MIKCC-type MADS box genes in grapevine.";
RL Plant Physiol. 149:354-369(2009).
RN [5]
RP GENE FAMILY.
RX PubMed=26818751; DOI=10.1186/s12864-016-2398-7;
RA Grimplet J., Martinez-Zapater J.M., Carmona M.J.;
RT "Structural and functional annotation of the MADS-box transcription factor
RT family in grapevine.";
RL BMC Genomics 17:80-80(2016).
CC -!- FUNCTION: Probable transcription factor involved in flower development.
CC {ECO:0000250|UniProtKB:Q0HA25}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00251}.
CC -!- TISSUE SPECIFICITY: Expressed during flower development in stamens and
CC petals. {ECO:0000269|PubMed:17920788}.
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DR EMBL; EF418603; ABN71371.1; -; mRNA.
DR EMBL; GU133632; ACZ26526.1; -; mRNA.
DR EMBL; FN595227; CBI19790.3; -; Genomic_DNA.
DR RefSeq; NP_001267960.1; NM_001281031.1.
DR AlphaFoldDB; E0CPH4; -.
DR SMR; E0CPH4; -.
DR STRING; 29760.VIT_18s0001g13460.t01; -.
DR EnsemblPlants; Vitvi18g01044_t001; Vitvi18g01044_P001; Vitvi18g01044.
DR GeneID; 100233029; -.
DR Gramene; Vitvi18g01044_t001; Vitvi18g01044_P001; Vitvi18g01044.
DR KEGG; vvi:100233029; -.
DR eggNOG; KOG0014; Eukaryota.
DR HOGENOM; CLU_053053_0_4_1; -.
DR InParanoid; E0CPH4; -.
DR OMA; VRHRKYH; -.
DR OrthoDB; 1142137at2759; -.
DR Proteomes; UP000009183; Chromosome 18.
DR ExpressionAtlas; E0CPH4; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00265; MADS_MEF2_like; 1.
DR Gene3D; 3.40.1810.10; -; 1.
DR InterPro; IPR033896; MADS_MEF2-like.
DR InterPro; IPR002487; TF_Kbox.
DR InterPro; IPR002100; TF_MADSbox.
DR InterPro; IPR036879; TF_MADSbox_sf.
DR Pfam; PF01486; K-box; 1.
DR Pfam; PF00319; SRF-TF; 1.
DR PRINTS; PR00404; MADSDOMAIN.
DR SMART; SM00432; MADS; 1.
DR SUPFAM; SSF55455; SSF55455; 1.
DR PROSITE; PS51297; K_BOX; 1.
DR PROSITE; PS00350; MADS_BOX_1; 1.
DR PROSITE; PS50066; MADS_BOX_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Flowering; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..226
FT /note="Agamous-like MADS-box protein AP3"
FT /id="PRO_0000447288"
FT DOMAIN 1..61
FT /note="MADS-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00251"
FT DOMAIN 84..174
FT /note="K-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00629"
FT CONFLICT 176
FT /note="H -> Y (in Ref. 1; ABN71371 and 2; ACZ26526)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 226 AA; 26194 MW; D943BFDC5560137A CRC64;
MARGKIEIKR IENSTNRQVT YSKRRNGIFK KASELTVLCD AKVSIIMLSS TGKLHEYISP
STTTKQIFDQ YQNTLGVDLW SYHYERMQEN LKKLKDVNKN LRKEIRQRMG EHLSDLSVEE
LRDLEQEMES SLKMVRDRKY QVINNQIETF KKKVRNVEQI HKNLLHEFDA RDRDQHYGLV
DNGGDYESVL GFSNGSSPVF ALSLQPNPPN DLHSGVGSDL TFTLLE
