HSP18_ORYSJ
ID HSP18_ORYSJ Reviewed; 166 AA.
AC Q5VRY1;
DT 03-NOV-2009, integrated into UniProtKB/Swiss-Prot.
DT 07-DEC-2004, sequence version 1.
DT 03-AUG-2022, entry version 95.
DE RecName: Full=18.0 kDa class II heat shock protein;
DE AltName: Full=18.0 kDa heat shock protein;
DE Short=OsHsp18.0;
GN Name=HSP18.0; OrderedLocusNames=Os01g0184100, LOC_Os01g08860;
GN ORFNames=P0489A01.22;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RC STRAIN=cv. Tainung 67;
RX AGRICOLA=IND43855814;
RA Chang P.-F.L., Jinn T.-L., Huang W.-K., Chen Y., Chang H.-M., Wang C.-W.;
RT "Induction of a cDNA clone from rice encoding a class II small heat shock
RT protein by heat stress, mechanical injury, and salicylic acid.";
RL Plant Sci. 172:64-75(2007).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP INDUCTION, AND GENE FAMILY.
RX PubMed=19703271; DOI=10.1186/1471-2164-10-393;
RA Sarkar N.K., Kim Y.-K., Grover A.;
RT "Rice sHsp genes: genomic organization and expression profiling under
RT stress and development.";
RL BMC Genomics 10:393-393(2009).
CC -!- SUBUNIT: May form oligomeric structures.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q5VRY1-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q5VRY1-2; Sequence=VSP_038272;
CC -!- INDUCTION: By heat shock. {ECO:0000269|PubMed:19703271}.
CC -!- SIMILARITY: Belongs to the small heat shock protein (HSP20) family.
CC {ECO:0000255|PROSITE-ProRule:PRU00285}.
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DR EMBL; DQ180746; ABA29610.1; -; mRNA.
DR EMBL; AP002484; BAD67794.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF04145.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS70762.1; -; Genomic_DNA.
DR EMBL; AK071240; BAG92388.1; -; mRNA.
DR AlphaFoldDB; Q5VRY1; -.
DR SMR; Q5VRY1; -.
DR STRING; 4530.OS01T0184100-01; -.
DR PaxDb; Q5VRY1; -.
DR PRIDE; Q5VRY1; -.
DR EnsemblPlants; Os01t0184100-01; Os01t0184100-01; Os01g0184100. [Q5VRY1-1]
DR Gramene; Os01t0184100-01; Os01t0184100-01; Os01g0184100. [Q5VRY1-1]
DR eggNOG; KOG0710; Eukaryota.
DR HOGENOM; CLU_046737_5_1_1; -.
DR InParanoid; Q5VRY1; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR ExpressionAtlas; Q5VRY1; baseline and differential.
DR Genevisible; Q5VRY1; OS.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0043621; F:protein self-association; IBA:GO_Central.
DR GO; GO:0051082; F:unfolded protein binding; IBA:GO_Central.
DR GO; GO:0051259; P:protein complex oligomerization; IBA:GO_Central.
DR GO; GO:0006457; P:protein folding; IBA:GO_Central.
DR GO; GO:0009408; P:response to heat; IEP:UniProtKB.
DR GO; GO:0042542; P:response to hydrogen peroxide; IBA:GO_Central.
DR GO; GO:0009651; P:response to salt stress; IBA:GO_Central.
DR Gene3D; 2.60.40.790; -; 1.
DR InterPro; IPR002068; A-crystallin/Hsp20_dom.
DR InterPro; IPR008978; HSP20-like_chaperone.
DR Pfam; PF00011; HSP20; 1.
DR SUPFAM; SSF49764; SSF49764; 1.
DR PROSITE; PS01031; SHSP; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Cytoplasm; Reference proteome; Stress response.
FT CHAIN 1..166
FT /note="18.0 kDa class II heat shock protein"
FT /id="PRO_0000387467"
FT DOMAIN 46..166
FT /note="sHSP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00285"
FT VAR_SEQ 68..100
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_038272"
SQ SEQUENCE 166 AA; 18031 MW; 45C3010A5E21A208 CRC64;
MESAMFGLET PLMTALQHLL DIPDGEGGAA GKQGATGGPT RAYVRDARAM AATPADVKDL
PGAYAFVVDM PGLKSSDIKV QVEEERLLVI SGERRRGGGE EEKEESCKYL RMERRMGKFM
RKFVLPDNAD VDKISAVCQD GVLTVTVEKL PPPEPKKPKT IEVKVA
