40G2_ORYSJ
ID 40G2_ORYSJ Reviewed; 343 AA.
AC Q6Z4N6; O24212; Q6Z4N5;
DT 30-NOV-2016, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=Ricin B-like lectin R40G2 {ECO:0000305};
DE AltName: Full=Osr40g2 {ECO:0000303|PubMed:9265787};
GN Name=R40G2 {ECO:0000305};
GN OrderedLocusNames=Os07g0683900 {ECO:0000312|EMBL:BAF22581.1},
GN LOC_Os07g48490 {ECO:0000305};
GN ORFNames=OSJNBa0060O17.13-1 {ECO:0000312|EMBL:BAC83804.1},
GN OSJNBa0060O17.13-2 {ECO:0000312|EMBL:BAC83805.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=9265787; DOI=10.1007/s004250050148;
RA Moons A., Gielen J., Vandekerckhove J., Van der Straeten D., Gheysen G.,
RA Van Montagu M.;
RT "An abscisic-acid- and salt-stress-responsive rice cDNA from a novel plant
RT gene family.";
RL Planta 202:443-454(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Ilpoombyeo;
RA Yoon U.H., Kim Y.H.;
RT "Molecular cloning of the seed developmental stage gene(osr40g2) in rice.";
RL Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Lectin which binds carbohydrates in vitro. Interacts through
CC its lectin domain with glycan structures containing specific motifs.
CC {ECO:0000250|UniProtKB:Q945P1}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q6Z4N6-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q6Z4N6-2; Sequence=VSP_058658;
CC -!- DOMAIN: The ricin B-type lectin domain binds glycan structures.
CC {ECO:0000250|UniProtKB:Q945P1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; Y08987; CAA70174.1; -; mRNA.
DR EMBL; EU267979; ACA50501.1; -; mRNA.
DR EMBL; KM051840; AIV98520.1; -; mRNA.
DR EMBL; AP005167; BAC83804.1; -; Genomic_DNA.
DR EMBL; AP005167; BAC83805.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF22581.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT03268.1; -; Genomic_DNA.
DR EMBL; AK103324; BAG96018.1; -; mRNA.
DR PIR; T03960; T03960.
DR AlphaFoldDB; Q6Z4N6; -.
DR SMR; Q6Z4N6; -.
DR STRING; 4530.OS07T0683900-01; -.
DR PaxDb; Q6Z4N6; -.
DR PRIDE; Q6Z4N6; -.
DR EnsemblPlants; Os07t0683900-01; Os07t0683900-01; Os07g0683900. [Q6Z4N6-1]
DR Gramene; Os07t0683900-01; Os07t0683900-01; Os07g0683900. [Q6Z4N6-1]
DR eggNOG; ENOG502QTCR; Eukaryota.
DR InParanoid; Q6Z4N6; -.
DR OMA; ILPWCKF; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR ExpressionAtlas; Q6Z4N6; baseline and differential.
DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW.
DR InterPro; IPR040249; Ricin_B-like_lectin_EULS3-like.
DR InterPro; IPR035992; Ricin_B-like_lectins.
DR PANTHER; PTHR31257; PTHR31257; 3.
DR SUPFAM; SSF50370; SSF50370; 2.
PE 2: Evidence at transcript level;
KW Alternative splicing; Lectin; Reference proteome.
FT CHAIN 1..343
FT /note="Ricin B-like lectin R40G2"
FT /id="PRO_0000438378"
FT DOMAIN 194..340
FT /note="Ricin B-type lectin"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00174"
FT VAR_SEQ 1..58
FT /note="Missing (in isoform 2)"
FT /id="VSP_058658"
FT CONFLICT 200
FT /note="A -> P (in Ref. 1; CAA70174)"
FT /evidence="ECO:0000305"
FT CONFLICT 227
FT /note="H -> Y (in Ref. 1; CAA70174)"
FT /evidence="ECO:0000305"
FT CONFLICT 285..289
FT /note="TESKD -> RESKH (in Ref. 1; CAA70174)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 343 AA; 38528 MW; 3DA167321BCCD097 CRC64;
MFGFGHHHNQ APAAPSDPNQ IFKIFCRANE NYCLTVRDSA VVLAPVNPKD EHQHWFKDMR
FSTKVKDGEG MPAFALVNKA TGLAVKHSLG QSHPVKLVPF NPEYEDASVL WTESKDVGKG
FRCIRMVNNT RLNLDAFHGD KDHGGVRDGT TVVLWEWCKG DNQSWKILPW GPEAHSSSPG
AATACTIGGV PVHTVRVFSA AGEDYCLTVR NGTACLAPKN PRDDYQHWIK DMRHSNKIRD
EEGYPAFALV NKVTGEAIKH STGQGHPVKL VPYNPEYQDE SVLWTESKDV GKGFRCIRMV
NNIYLNFDAF HGDKDHGGIH DGTEIVLWKW CEGDNQRWKI LPW
