40G3_ORYSJ
ID 40G3_ORYSJ Reviewed; 204 AA.
AC Q6Z4N4; O24213;
DT 30-NOV-2016, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Ricin B-like lectin R40G3 {ECO:0000305};
DE AltName: Full=Osr40g3 {ECO:0000303|PubMed:9265787};
GN Name=R40G3 {ECO:0000305};
GN OrderedLocusNames=Os07g0684000 {ECO:0000312|EMBL:BAF22582.1},
GN LOC_Os07g48500;
GN ORFNames=OsJ_25617 {ECO:0000312|EMBL:EAZ41124.1},
GN OSJNBa0060O17.15 {ECO:0000312|EMBL:BAC83806.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000312|EMBL:BAC83806.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=9265787; DOI=10.1007/s004250050148;
RA Moons A., Gielen J., Vandekerckhove J., Van der Straeten D., Gheysen G.,
RA Van Montagu M.;
RT "An abscisic-acid- and salt-stress-responsive rice cDNA from a novel plant
RT gene family.";
RL Planta 202:443-454(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Ilpoombyeo;
RA Yoon U.H., Kim Y.H.;
RT "Molecular cloning of the osr40g3 gene in rice.";
RL Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: Lectin which binds carbohydrates in vitro. Interacts through
CC its lectin domain with glycan structures containing specific motifs.
CC {ECO:0000250|UniProtKB:Q945P1}.
CC -!- TISSUE SPECIFICITY: Expressed in shoots and lamina.
CC {ECO:0000269|PubMed:9265787}.
CC -!- INDUCTION: Induced by abscisic acid (ABA) and salt stress in shoots.
CC {ECO:0000269|PubMed:9265787}.
CC -!- DOMAIN: The ricin B-type lectin domain binds glycan structures.
CC {ECO:0000250|UniProtKB:Q945P1}.
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DR EMBL; Y08988; CAA70175.1; -; mRNA.
DR EMBL; EU267982; ACA50504.1; -; mRNA.
DR EMBL; AP005167; BAC83806.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF22582.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT03270.1; -; Genomic_DNA.
DR EMBL; CM000144; EAZ41124.1; -; Genomic_DNA.
DR PIR; T03962; T03962.
DR AlphaFoldDB; Q6Z4N4; -.
DR SMR; Q6Z4N4; -.
DR STRING; 4530.OS07T0684000-01; -.
DR PaxDb; Q6Z4N4; -.
DR PRIDE; Q6Z4N4; -.
DR EnsemblPlants; Os07t0684000-01; Os07t0684000-01; Os07g0684000.
DR Gramene; Os07t0684000-01; Os07t0684000-01; Os07g0684000.
DR eggNOG; ENOG502QTCR; Eukaryota.
DR HOGENOM; CLU_039568_2_0_1; -.
DR InParanoid; Q6Z4N4; -.
DR OMA; LARPPCD; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW.
DR InterPro; IPR040249; Ricin_B-like_lectin_EULS3-like.
DR InterPro; IPR035992; Ricin_B-like_lectins.
DR PANTHER; PTHR31257; PTHR31257; 1.
DR SUPFAM; SSF50370; SSF50370; 1.
PE 2: Evidence at transcript level;
KW Lectin; Reference proteome.
FT CHAIN 1..204
FT /note="Ricin B-like lectin R40G3"
FT /id="PRO_0000438379"
FT DOMAIN 54..200
FT /note="Ricin B-type lectin"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00174"
SQ SEQUENCE 204 AA; 22822 MW; 0A90ABC53CD0929A CRC64;
MDFYGRREQY GGYGGYGGGG ALATPGYAPA APYGMSQVNI EGNGCGRTLP PQPTVKVYCR
ANPNYAMTAR NGAVVLAPAN PKDEYQHWIK DMRWSTSIKD EEGYPAFALV NKATGQAIKH
SLGQSHPVRL VPYNPEVMDE SVLWTESRDV GNGFRCIRMV NNIYLNFDAF HGDKYHGGVR
DGTDIVLWKW CEGDNQRWKI QPYY
