ID   HYPD1_BRADU             Reviewed;         380 AA.
AC   Q9ANP1;
DT   28-FEB-2003, integrated into UniProtKB/Swiss-Prot.
DT   01-JUN-2001, sequence version 1.
DT   03-AUG-2022, entry version 93.
DE   RecName: Full=Hydrogenase maturation factor HypD1 {ECO:0000250|UniProtKB:P24192};
GN   Name=hypD1; Synonyms=hypD; OrderedLocusNames=blr1736;
OS   Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 /
OS   NBRC 14792 / USDA 110).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC   Bradyrhizobiaceae; Bradyrhizobium.
OX   NCBI_TaxID=224911;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=USDA 110spc4;
RX   PubMed=11157954; DOI=10.1128/jb.183.4.1405-1412.2001;
RA   Goettfert M., Roethlisberger S., Kuendig C., Beck C., Marty R.,
RA   Hennecke H.;
RT   "Potential symbiosis-specific genes uncovered by sequencing a 410-kb DNA
RT   region of the Bradyrhizobium japonicum chromosome.";
RL   J. Bacteriol. 183:1405-1412(2001).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110;
RX   PubMed=12597275; DOI=10.1093/dnares/9.6.189;
RA   Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S.,
RA   Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M.,
RA   Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.;
RT   "Complete genomic sequence of nitrogen-fixing symbiotic bacterium
RT   Bradyrhizobium japonicum USDA110.";
RL   DNA Res. 9:189-197(2002).
CC   -!- FUNCTION: Involved in the maturation of [NiFe] hydrogenases. Involved
CC       in the biosynthesis of the Fe(CN)(2)CO cofactor.
CC       {ECO:0000250|UniProtKB:P24192}.
CC   -!- COFACTOR:
CC       Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883;
CC         Evidence={ECO:0000250|UniProtKB:P24192};
CC   -!- PATHWAY: Protein modification; [NiFe] hydrogenase maturation.
CC       {ECO:0000250|UniProtKB:P24192}.
CC   -!- SIMILARITY: Belongs to the HypD family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAC47001.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR   EMBL; AF322012; AAG60722.1; -; Genomic_DNA.
DR   EMBL; BA000040; BAC47001.1; ALT_INIT; Genomic_DNA.
DR   RefSeq; NP_768376.1; NC_004463.1.
DR   RefSeq; WP_028154318.1; NZ_CP011360.1.
DR   AlphaFoldDB; Q9ANP1; -.
DR   SMR; Q9ANP1; -.
DR   STRING; 224911.27349989; -.
DR   EnsemblBacteria; BAC47001; BAC47001; BAC47001.
DR   GeneID; 64067044; -.
DR   KEGG; bja:blr1736; -.
DR   PATRIC; fig|224911.44.peg.1199; -.
DR   eggNOG; COG0409; Bacteria.
DR   HOGENOM; CLU_048562_1_0_5; -.
DR   InParanoid; Q9ANP1; -.
DR   OMA; HVCGSHE; -.
DR   UniPathway; UPA00335; -.
DR   Proteomes; UP000002526; Chromosome.
DR   GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IBA:GO_Central.
DR   GO; GO:0070025; F:carbon monoxide binding; IBA:GO_Central.
DR   GO; GO:0005506; F:iron ion binding; IBA:GO_Central.
DR   GO; GO:0051604; P:protein maturation; IBA:GO_Central.
DR   Gene3D; 3.40.50.11750; -; 2.
DR   Gene3D; 6.10.20.100; -; 1.
DR   InterPro; IPR002780; Hyd_form_HypD.
DR   InterPro; IPR042243; HypD_1.
DR   InterPro; IPR042244; HypD_2_sf.
DR   PANTHER; PTHR30149; PTHR30149; 1.
DR   Pfam; PF01924; HypD; 1.
DR   PIRSF; PIRSF005622; Hydrgn_mat_hypD; 1.
DR   TIGRFAMs; TIGR00075; hypD; 1.
PE   3: Inferred from homology;
KW   4Fe-4S; Iron; Iron-sulfur; Metal-binding; Reference proteome.
FT   CHAIN           1..380
FT                   /note="Hydrogenase maturation factor HypD1"
FT                   /id="PRO_0000201449"
FT   BINDING         36
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /evidence="ECO:0000250|UniProtKB:P24192"
FT   BINDING         64
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /evidence="ECO:0000250|UniProtKB:P24192"
FT   BINDING         67
FT                   /ligand="Fe cation"
FT                   /ligand_id="ChEBI:CHEBI:24875"
FT                   /evidence="ECO:0000250|UniProtKB:P24192"
SQ   SEQUENCE   380 AA;  42213 MW;  91A5BF28614689FB CRC64;
     MKYSSEFRDK TIAQGLARAI DAEVSSQRAY RFVEFCGGHT HAISRYGLED LLPANVRMIH
     GPGCPVCVLP ASRIDMAIRL AERPEVILCV YGDLMRAPGS QGQSLLLAKA LGAHIRMVYS
     TLDAIRLAEQ TPGREVVFFA IGFETTTPPT AVMIRIAEHK RLEGLSVFCN HVLTPSAMHR
     ILENPKIRNT GGVPIDGFIG PAHVSTIVGT QPYEPMAEQF EKPIVVAGFE PLDVLQAVLM
     LVRQVNQNRH EVENQYSRAV TREGNRRAKE EVSQVFELRE QFEWRGLGLV PNSGLKLKQS
     YAKFDAETRF AIHDLRVADN PACECCAILR GAKRPIDCKL FGNICTPETP IGACMVSSEG
     ACAAYWTYRR VRDEQARQTS