IAA10_ORYSJ
ID IAA10_ORYSJ Reviewed; 281 AA.
AC Q0DWF2; B7EWI8; Q59AA1; Q6K695; Q6K696;
DT 12-JUN-2007, integrated into UniProtKB/Swiss-Prot.
DT 12-JUN-2007, sequence version 2.
DT 25-MAY-2022, entry version 86.
DE RecName: Full=Auxin-responsive protein IAA10;
DE AltName: Full=Indoleacetic acid-induced protein 10;
GN Name=IAA10; OrderedLocusNames=Os02g0817600, LOC_Os02g57250;
GN ORFNames=OJ1136_C12.16-1, OJ1136_C12.16-2,
GN OsJ_08880 {ECO:0000312|EMBL:EEE58047.1}, P0643F09.36-1, P0643F09.36-2;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NOMENCLATURE.
RX PubMed=16200395; DOI=10.1007/s10142-005-0005-0;
RA Jain M., Kaur N., Garg R., Thakur J.K., Tyagi A.K., Khurana J.P.;
RT "Structure and expression analysis of early auxin-responsive Aux/IAA gene
RT family in rice (Oryza sativa).";
RL Funct. Integr. Genomics 6:47-59(2006).
CC -!- FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that
CC function as repressors of early auxin response genes at low auxin
CC concentrations. {ECO:0000250}.
CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q0DWF2-1, Q59AA1-1;
CC Sequence=Displayed;
CC Name=2;
CC IsoId=Q0DWF2-2, Q59AA1-2;
CC Sequence=VSP_017235;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to a competing acceptor splice
CC site. {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the Aux/IAA family. {ECO:0000305}.
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DR EMBL; AP004028; BAD21523.1; -; Genomic_DNA.
DR EMBL; AP004028; BAD21524.1; -; Genomic_DNA.
DR EMBL; AP005111; BAD22024.1; -; Genomic_DNA.
DR EMBL; AP005111; BAD22025.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF10436.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS81587.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS81588.1; -; Genomic_DNA.
DR EMBL; CM000139; EEE58047.1; -; Genomic_DNA.
DR EMBL; AK069892; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AK104501; BAG96735.1; -; mRNA.
DR RefSeq; XP_015626382.1; XM_015770896.1. [Q0DWF2-1]
DR RefSeq; XP_015626383.1; XM_015770897.1. [Q0DWF2-2]
DR AlphaFoldDB; Q0DWF2; -.
DR SMR; Q0DWF2; -.
DR STRING; 4530.OS02T0817600-02; -.
DR PaxDb; Q0DWF2; -.
DR PRIDE; Q0DWF2; -.
DR EnsemblPlants; Os02t0817600-01; Os02t0817600-01; Os02g0817600. [Q0DWF2-2]
DR EnsemblPlants; Os02t0817600-02; Os02t0817600-02; Os02g0817600. [Q0DWF2-1]
DR EnsemblPlants; Os02t0817600-03; Os02t0817600-03; Os02g0817600. [Q0DWF2-2]
DR GeneID; 4331149; -.
DR Gramene; Os02t0817600-01; Os02t0817600-01; Os02g0817600. [Q0DWF2-2]
DR Gramene; Os02t0817600-02; Os02t0817600-02; Os02g0817600. [Q0DWF2-1]
DR Gramene; Os02t0817600-03; Os02t0817600-03; Os02g0817600. [Q0DWF2-2]
DR KEGG; osa:4331149; -.
DR eggNOG; ENOG502R8MA; Eukaryota.
DR InParanoid; Q0DWF2; -.
DR OMA; GNSQNHC; -.
DR OrthoDB; 1104776at2759; -.
DR PlantReactome; R-OSA-5608118; Auxin signalling.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR ExpressionAtlas; Q0DWF2; baseline and differential.
DR Genevisible; Q0DWF2; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR InterPro; IPR033389; AUX/IAA_dom.
DR InterPro; IPR003311; AUX_IAA.
DR InterPro; IPR000270; PB1_dom.
DR PANTHER; PTHR31734; PTHR31734; 1.
DR Pfam; PF02309; AUX_IAA; 1.
DR PROSITE; PS51745; PB1; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Auxin signaling pathway; Nucleus; Reference proteome;
KW Repressor; Transcription; Transcription regulation.
FT CHAIN 1..281
FT /note="Auxin-responsive protein IAA10"
FT /id="PRO_0000223209"
FT DOMAIN 163..259
FT /note="PB1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT REGION 1..115
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 130..157
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 36..40
FT /note="EAR-like (transcriptional repression)"
FT /evidence="ECO:0000250"
FT COMPBIAS 17..32
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 134..157
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 109
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_017235"
SQ SEQUENCE 281 AA; 30125 MW; 33C7ECE38718E7D7 CRC64;
MRGGVAGPTA GEPPGTEAEA EEVEESSAGD DEELELGLSL GSKKQQQQQH APCRILTARD
LQPAAALSPD SSVSSSSPAA AAAAGGKRAE GPTATTSPGT VASGHPHSSF GVVGWPPIRQ
FRMNSLFNQA KENTSETDTK KTATNESDVQ KDKEEGEKKG RVAGWVKVNM DGEVIGRKVD
LNAHRSYKTL ALALELMFTK PSIGLCASHN TNSLKLLDNS AEYQLTYEDR DGDWMLVGDV
PWEMFVSSVK RLRIMRTSDA NGLGQRYQGI HRTIASTRGR S
