IAA11_ORYSJ
ID IAA11_ORYSJ Reviewed; 233 AA.
AC Q75GK0; A0A0P0W0E9; Q0DQ61; Q10GD2;
DT 07-FEB-2006, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 90.
DE RecName: Full=Auxin-responsive protein IAA11;
DE AltName: Full=Indoleacetic acid-induced protein 11;
GN Name=IAA11; OrderedLocusNames=Os03g0633500, LOC_Os03g43400;
GN ORFNames=OSJNBa0010N03.17;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE.
RX PubMed=16200395; DOI=10.1007/s10142-005-0005-0;
RA Jain M., Kaur N., Garg R., Thakur J.K., Tyagi A.K., Khurana J.P.;
RT "Structure and expression analysis of early auxin-responsive Aux/IAA gene
RT family in rice (Oryza sativa).";
RL Funct. Integr. Genomics 6:47-59(2006).
CC -!- FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that
CC function as repressors of early auxin response genes at low auxin
CC concentrations. {ECO:0000250}.
CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Highly expressed in etiolated shoots. Expressed in
CC roots. {ECO:0000269|PubMed:16200395}.
CC -!- INDUCTION: Not induced by auxin. {ECO:0000269|PubMed:16200395}.
CC -!- SIMILARITY: Belongs to the Aux/IAA family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF12627.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAS85383.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC145379; AAS07281.1; -; Genomic_DNA.
DR EMBL; AC145780; AAU89153.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF97770.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12627.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014959; BAS85383.1; ALT_SEQ; Genomic_DNA.
DR RefSeq; XP_015628434.1; XM_015772948.1.
DR AlphaFoldDB; Q75GK0; -.
DR SMR; Q75GK0; -.
DR STRING; 39947.Q75GK0; -.
DR PaxDb; Q75GK0; -.
DR PRIDE; Q75GK0; -.
DR EnsemblPlants; Os03t0633500-01; Os03t0633500-01; Os03g0633500.
DR GeneID; 4333511; -.
DR Gramene; Os03t0633500-01; Os03t0633500-01; Os03g0633500.
DR KEGG; osa:4333511; -.
DR InParanoid; Q75GK0; -.
DR OrthoDB; 1203639at2759; -.
DR PlantReactome; R-OSA-5608118; Auxin signalling.
DR PlantReactome; R-OSA-9030557; Lateral root initiation.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR GO; GO:0009733; P:response to auxin; IC:Gramene.
DR InterPro; IPR033389; AUX/IAA_dom.
DR InterPro; IPR003311; AUX_IAA.
DR InterPro; IPR000270; PB1_dom.
DR PANTHER; PTHR31734; PTHR31734; 1.
DR Pfam; PF02309; AUX_IAA; 1.
DR PROSITE; PS51745; PB1; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; Nucleus; Reference proteome; Repressor;
KW Transcription; Transcription regulation.
FT CHAIN 1..233
FT /note="Auxin-responsive protein IAA11"
FT /id="PRO_0000223210"
FT DOMAIN 122..217
FT /note="PB1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT REGION 1..27
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 46..100
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 11..15
FT /note="EAR-like (transcriptional repression)"
FT /evidence="ECO:0000250"
SQ SEQUENCE 233 AA; 25309 MW; 52C82573D5DA98FB CRC64;
MAGLGFDETE LRLGLPGAGE LAARSSGKRG FAETIDLKLK LQPAAPAAVS GEEGAQEDKE
DADAAAAAAD EKMSMKRSAS QSSVVTAEPD PDKPRAPKAQ VVGWPPVRSF RKNVLAEKCK
AAALVKVSMD GAPYLRKIDV AMYKSYPELS MAFQNMFTSF TIGKCGSHQQ LKESNKLRDD
LEYVPTYEDK DGDWMLVGDV PWEMFVESCK RLRIMKGSEA IGLAPRAVEK CKS
