IAA25_ORYSJ
ID IAA25_ORYSJ Reviewed; 246 AA.
AC P0C128; Q0J8J0;
DT 07-FEB-2006, integrated into UniProtKB/Swiss-Prot.
DT 07-FEB-2006, sequence version 1.
DT 03-AUG-2022, entry version 78.
DE RecName: Full=Auxin-responsive protein IAA25;
DE AltName: Full=Indoleacetic acid-induced protein 25;
GN Name=IAA25; OrderedLocusNames=Os08g0109400, LOC_Os08g01780;
GN ORFNames=OsJ_21291 {ECO:0000312|EMBL:EAZ36954.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE.
RX PubMed=16200395; DOI=10.1007/s10142-005-0005-0;
RA Jain M., Kaur N., Garg R., Thakur J.K., Tyagi A.K., Khurana J.P.;
RT "Structure and expression analysis of early auxin-responsive Aux/IAA gene
RT family in rice (Oryza sativa).";
RL Funct. Integr. Genomics 6:47-59(2006).
CC -!- FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that
CC function as repressors of early auxin response genes at low auxin
CC concentrations. {ECO:0000250}.
CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Highly expressed in flowers. Expressed in roots and
CC seedlings. {ECO:0000269|PubMed:16200395}.
CC -!- INDUCTION: Not induced by auxin. {ECO:0000269|PubMed:16200395}.
CC -!- SIMILARITY: Belongs to the Aux/IAA family. {ECO:0000305}.
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DR EMBL; AP004584; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP008214; BAF22725.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT03487.1; -; Genomic_DNA.
DR EMBL; CM000143; EAZ36954.1; -; Genomic_DNA.
DR EMBL; AK068232; BAG90814.1; -; mRNA.
DR RefSeq; XP_015648256.1; XM_015792770.1.
DR RefSeq; XP_015648257.1; XM_015792771.1.
DR RefSeq; XP_015648258.1; XM_015792772.1.
DR RefSeq; XP_015648260.1; XM_015792774.1.
DR RefSeq; XP_015648261.1; XM_015792775.1.
DR AlphaFoldDB; P0C128; -.
DR SMR; P0C128; -.
DR STRING; 4530.OS08T0109400-01; -.
DR PaxDb; P0C128; -.
DR PRIDE; P0C128; -.
DR EnsemblPlants; Os08t0109400-01; Os08t0109400-01; Os08g0109400.
DR GeneID; 4344471; -.
DR Gramene; Os08t0109400-01; Os08t0109400-01; Os08g0109400.
DR KEGG; osa:4344471; -.
DR eggNOG; ENOG502S0RH; Eukaryota.
DR HOGENOM; CLU_072437_0_0_1; -.
DR InParanoid; P0C128; -.
DR OMA; MEGCAVG; -.
DR OrthoDB; 1178757at2759; -.
DR PlantReactome; R-OSA-5608118; Auxin signalling.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000007752; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 8.
DR Genevisible; P0C128; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR InterPro; IPR033389; AUX/IAA_dom.
DR InterPro; IPR003311; AUX_IAA.
DR InterPro; IPR000270; PB1_dom.
DR PANTHER; PTHR31734; PTHR31734; 1.
DR Pfam; PF02309; AUX_IAA; 1.
DR PROSITE; PS51745; PB1; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; Nucleus; Reference proteome; Repressor;
KW Transcription; Transcription regulation.
FT CHAIN 1..246
FT /note="Auxin-responsive protein IAA25"
FT /id="PRO_0000223224"
FT DOMAIN 143..238
FT /note="PB1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 28..32
FT /note="EAR-like (transcriptional repression)"
FT /evidence="ECO:0000250"
FT COMPBIAS 7..22
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 246 AA; 27324 MW; FC7D92834AF5BE4D CRC64;
MKSSSVAPRL KQERQDDCKF QEGDVNSLEL RLGISSDNDQ ISGGGAASPW LGVGVHPWSL
AARQGKAALE QAHQRPNECA VQRENRAASS AQLVGWPPVR AFRKNLSTPK PADADDLMNK
VKLCSDEGHG SRCAAQERRS SSTMFVKVNL EGYAVGRKID LKAHRSYDSL SQALQSMFHG
FLSDGIATRD NELQQMEEGS KKRYVLVYED NEGDRMLVGD VPWELFIASV KRLYIAQDPR
VHAKLR
