IAA6_ORYSJ
ID IAA6_ORYSJ Reviewed; 335 AA.
AC Q8LQ74; A0A0P0V810; Q0JJF6;
DT 07-FEB-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=Auxin-responsive protein IAA6;
DE AltName: Full=Indoleacetic acid-induced protein 6;
GN Name=IAA6;
GN OrderedLocusNames=Os01g0741900 {ECO:0000312|EMBL:BAF06122.1},
GN LOC_Os01g53880 {ECO:0000305};
GN ORFNames=OsJ_03405 {ECO:0000312|EMBL:EAZ13489.1}, P0439E07.11;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP TISSUE SPECIFICITY, INDUCTION, AND NOMENCLATURE.
RX PubMed=16200395; DOI=10.1007/s10142-005-0005-0;
RA Jain M., Kaur N., Garg R., Thakur J.K., Tyagi A.K., Khurana J.P.;
RT "Structure and expression analysis of early auxin-responsive Aux/IAA gene
RT family in rice (Oryza sativa).";
RL Funct. Integr. Genomics 6:47-59(2006).
CC -!- FUNCTION: Aux/IAA proteins are short-lived transcriptional factors that
CC function as repressors of early auxin response genes at low auxin
CC concentrations. {ECO:0000250}.
CC -!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Highly expressed in roots. Expressed in shoots and
CC flowers. {ECO:0000269|PubMed:16200395}.
CC -!- INDUCTION: Not induced by auxin. {ECO:0000269|PubMed:16200395}.
CC -!- SIMILARITY: Belongs to the Aux/IAA family. {ECO:0000305}.
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DR EMBL; AP003768; BAB91924.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06122.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS74279.1; -; Genomic_DNA.
DR EMBL; CM000138; EAZ13489.1; -; Genomic_DNA.
DR EMBL; AK068600; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015619920.1; XM_015764434.1.
DR AlphaFoldDB; Q8LQ74; -.
DR SMR; Q8LQ74; -.
DR STRING; 4530.OS01T0741900-01; -.
DR PaxDb; Q8LQ74; -.
DR PRIDE; Q8LQ74; -.
DR DNASU; 4326541; -.
DR EnsemblPlants; Os01t0741900-01; Os01t0741900-01; Os01g0741900.
DR GeneID; 4326541; -.
DR Gramene; Os01t0741900-01; Os01t0741900-01; Os01g0741900.
DR KEGG; osa:4326541; -.
DR eggNOG; ENOG502QPYY; Eukaryota.
DR HOGENOM; CLU_049393_2_0_1; -.
DR InParanoid; Q8LQ74; -.
DR OMA; CGKELAM; -.
DR OrthoDB; 1210341at2759; -.
DR PlantReactome; R-OSA-9030680; Crown root development.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q8LQ74; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR GO; GO:0006417; P:regulation of translation; ISS:Gramene.
DR GO; GO:0009733; P:response to auxin; IC:Gramene.
DR InterPro; IPR033389; AUX/IAA_dom.
DR InterPro; IPR003311; AUX_IAA.
DR InterPro; IPR000270; PB1_dom.
DR PANTHER; PTHR31734; PTHR31734; 1.
DR Pfam; PF02309; AUX_IAA; 1.
DR PROSITE; PS51745; PB1; 1.
PE 2: Evidence at transcript level;
KW Auxin signaling pathway; Nucleus; Reference proteome; Repressor;
KW Transcription; Transcription regulation.
FT CHAIN 1..335
FT /note="Auxin-responsive protein IAA6"
FT /id="PRO_0000223205"
FT DOMAIN 217..321
FT /note="PB1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01081"
FT REGION 81..102
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 143..180
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 188..207
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 51..55
FT /note="EAR-like (transcriptional repression)"
FT /evidence="ECO:0000250"
FT COMPBIAS 145..159
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 251
FT /note="L -> P (in Ref. 6; AK068600)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 335 AA; 36706 MW; C7AFA8BCA9BE22F0 CRC64;
MEEGSNKREG LPPQLLDLIP DEKEWKLREA LGLGRSRNAG FDGEEDKKLD LKLGLPGFIE
DDEAETLRDY RLQQESPSLS LSFFPKHSKT TSSTTTTTGA KRGFIDTVED KTEGYNDQKQ
QARAGCGKEL AVEEMIAAVS ERKKGCCPPP PPPHGAPATP ARNRPQTQGR GAAAPVVGWP
PIRSFRRNLA SSSSSKHSPE PQNDNANAKV TLTCKKNPLV KINMDGIPIG RKIDLAAYNS
YDGLSSAVKQ LFHGFLQAQK DQTNAQIAQQ GADDKIFYQL LDGSGEYTLV YEDSEGDRML
VGDVPWKVFV STAKRLRVLR SSELSHTLIG ATARV
