IDD11_ARATH
ID IDD11_ARATH Reviewed; 513 AA.
AC Q9LRW7; F4JEJ5; F4JEJ6; Q700C1;
DT 07-JAN-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 154.
DE RecName: Full=Protein indeterminate-domain 11 {ECO:0000303|PubMed:16784536};
GN Name=IDD11 {ECO:0000303|PubMed:16784536};
GN OrderedLocusNames=At3g13810 {ECO:0000312|Araport:AT3G13810};
GN ORFNames=MCP4.2 {ECO:0000312|EMBL:BAB02904.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RX PubMed=15208423; DOI=10.1104/pp.104.042176;
RA Gong W., Shen Y.-P., Ma L.-G., Pan Y., Du Y.-L., Wang D.-H., Yang J.-Y.,
RA Hu L.-D., Liu X.-F., Dong C.-X., Ma L., Chen Y.-H., Yang X.-Y., Gao Y.,
RA Zhu D., Tan X., Mu J.-Y., Zhang D.-B., Liu Y.-L., Dinesh-Kumar S.P., Li Y.,
RA Wang X.-P., Gu H.-Y., Qu L.-J., Bai S.-N., Lu Y.-T., Li J.-Y., Zhao J.-D.,
RA Zuo J., Huang H., Deng X.-W., Zhu Y.-X.;
RT "Genome-wide ORFeome cloning and analysis of Arabidopsis transcription
RT factor genes.";
RL Plant Physiol. 135:773-782(2004).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16784536; DOI=10.1186/1471-2164-7-158;
RA Colasanti J., Tremblay R., Wong A.Y., Coneva V., Kozaki A., Mable B.K.;
RT "The maize INDETERMINATE1 flowering time regulator defines a highly
RT conserved zinc finger protein family in higher plants.";
RL BMC Genomics 7:158-158(2006).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00768}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=3;
CC Name=1;
CC IsoId=Q9LRW7-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9LRW7-2; Sequence=VSP_057330, VSP_057331;
CC Name=3;
CC IsoId=Q9LRW7-3; Sequence=VSP_057329, VSP_057331;
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DR EMBL; AB028610; BAB02904.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75418.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75419.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75420.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65023.1; -; Genomic_DNA.
DR EMBL; AF361797; AAK32810.1; -; mRNA.
DR EMBL; AY091693; AAM10292.1; -; mRNA.
DR EMBL; AY568673; AAS79563.1; -; mRNA.
DR EMBL; AJ630504; CAG25877.1; -; mRNA.
DR RefSeq; NP_001189882.1; NM_001202953.1. [Q9LRW7-2]
DR RefSeq; NP_001189883.1; NM_001202954.1. [Q9LRW7-3]
DR RefSeq; NP_001327022.1; NM_001338084.1. [Q9LRW7-1]
DR RefSeq; NP_187997.1; NM_112234.3. [Q9LRW7-1]
DR AlphaFoldDB; Q9LRW7; -.
DR STRING; 3702.AT3G13810.2; -.
DR iPTMnet; Q9LRW7; -.
DR PRIDE; Q9LRW7; -.
DR ProteomicsDB; 228776; -. [Q9LRW7-1]
DR EnsemblPlants; AT3G13810.1; AT3G13810.1; AT3G13810. [Q9LRW7-1]
DR EnsemblPlants; AT3G13810.2; AT3G13810.2; AT3G13810. [Q9LRW7-2]
DR EnsemblPlants; AT3G13810.3; AT3G13810.3; AT3G13810. [Q9LRW7-3]
DR EnsemblPlants; AT3G13810.4; AT3G13810.4; AT3G13810. [Q9LRW7-1]
DR GeneID; 820593; -.
DR Gramene; AT3G13810.1; AT3G13810.1; AT3G13810. [Q9LRW7-1]
DR Gramene; AT3G13810.2; AT3G13810.2; AT3G13810. [Q9LRW7-2]
DR Gramene; AT3G13810.3; AT3G13810.3; AT3G13810. [Q9LRW7-3]
DR Gramene; AT3G13810.4; AT3G13810.4; AT3G13810. [Q9LRW7-1]
DR KEGG; ath:AT3G13810; -.
DR Araport; AT3G13810; -.
DR TAIR; locus:2087979; AT3G13810.
DR eggNOG; KOG1721; Eukaryota.
DR HOGENOM; CLU_014578_4_1_1; -.
DR OrthoDB; 986397at2759; -.
DR PhylomeDB; Q9LRW7; -.
DR PRO; PR:Q9LRW7; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LRW7; baseline and differential.
DR Genevisible; Q9LRW7; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR SMART; SM00355; ZnF_C2H2; 3.
DR SUPFAM; SSF57667; SSF57667; 1.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Metal-binding; Nucleus; Phosphoprotein;
KW Reference proteome; Repeat; Transcription; Transcription regulation; Zinc;
KW Zinc-finger.
FT CHAIN 1..513
FT /note="Protein indeterminate-domain 11"
FT /id="PRO_0000431545"
FT ZN_FING 99..121
FT /note="C2H2-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT ZN_FING 141..171
FT /note="C2H2-type 2"
FT /evidence="ECO:0000305"
FT ZN_FING 176..199
FT /note="C2H2-type 2; degenerate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT ZN_FING 203..226
FT /note="CCHC-type 2; atypical"
FT /evidence="ECO:0000305"
FT REGION 1..84
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 213..225
FT /note="SHR-binding"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT REGION 255..280
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 334..358
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 163..170
FT /note="Nuclear localization signal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00768"
FT COMPBIAS 1..74
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 260..280
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 336..358
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 178
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 181
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 194
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 198
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 205
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 207
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 220
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 224
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT MOD_RES 89
FT /note="Phosphoserine"
FT /evidence="ECO:0000250|UniProtKB:Q8GYC1"
FT VAR_SEQ 1..19
FT /note="Missing (in isoform 3)"
FT /id="VSP_057329"
FT VAR_SEQ 1..5
FT /note="Missing (in isoform 2)"
FT /id="VSP_057330"
FT VAR_SEQ 61..80
FT /note="LVVPDSQTQKKRRNQPGNPD -> IQKLSCSWTDSLFQLFDTVTFLEILY
FT (in isoform 2 and isoform 3)"
FT /id="VSP_057331"
FT CONFLICT 61..62
FT /note="LV -> RQQLF (in Ref. 4; AAS79563/CAG25877)"
FT /evidence="ECO:0000305"
FT CONFLICT 68
FT /note="T -> P (in Ref. 4; AAS79563/CAG25877)"
FT /evidence="ECO:0000305"
FT CONFLICT 437
FT /note="R -> G (in Ref. 4; AAS79563/CAG25877)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 513 AA; 56727 MW; E7C1C7D26890B52C CRC64;
MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ
LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG
HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK
CSKKYAVQSD CKAHSKTCGT KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN
QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA
SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT TTMAAMMTSP SGFISSNNNN
HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR
PLMSHNEILS FAGLGSCINS SASDQLHPKP WQG
