IDD6_ARATH
ID IDD6_ARATH Reviewed; 467 AA.
AC Q8RWX7; Q9MA25;
DT 07-JAN-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 1.
DT 03-AUG-2022, entry version 146.
DE RecName: Full=Protein indeterminate-domain 6, chloroplastic {ECO:0000303|PubMed:16784536};
DE Flags: Precursor;
GN Name=IDD6 {ECO:0000303|PubMed:16784536};
GN OrderedLocusNames=At1g14580 {ECO:0000312|Araport:AT1G14580};
GN ORFNames=T5E21.8 {ECO:0000312|EMBL:AAF63168.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16784536; DOI=10.1186/1471-2164-7-158;
RA Colasanti J., Tremblay R., Wong A.Y., Coneva V., Kozaki A., Mable B.K.;
RT "The maize INDETERMINATE1 flowering time regulator defines a highly
RT conserved zinc finger protein family in higher plants.";
RL BMC Genomics 7:158-158(2006).
RN [5]
RP SUBCELLULAR LOCATION.
RX PubMed=16934950; DOI=10.1016/j.gene.2006.06.022;
RA Wagner R., Pfannschmidt T.;
RT "Eukaryotic transcription factors in plastids--Bioinformatic assessment and
RT implications for the evolution of gene expression machineries in plants.";
RL Gene 381:62-70(2006).
RN [6]
RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-72, AND IDENTIFICATION BY
RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=19376835; DOI=10.1104/pp.109.138677;
RA Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA Grossmann J., Gruissem W., Baginsky S.;
RT "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT chloroplast kinase substrates and phosphorylation networks.";
RL Plant Physiol. 150:889-903(2009).
CC -!- FUNCTION: Probable transcription factor. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000305|PubMed:16934950}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF63168.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC010657; AAF63168.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE29186.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE29187.1; -; Genomic_DNA.
DR EMBL; AY091041; AAM13862.1; -; mRNA.
DR EMBL; AY133766; AAM91700.1; -; mRNA.
DR RefSeq; NP_001184994.1; NM_001198065.2.
DR RefSeq; NP_172910.2; NM_101325.4.
DR AlphaFoldDB; Q8RWX7; -.
DR SMR; Q8RWX7; -.
DR STRING; 3702.AT1G14580.1; -.
DR iPTMnet; Q8RWX7; -.
DR PaxDb; Q8RWX7; -.
DR EnsemblPlants; AT1G14580.1; AT1G14580.1; AT1G14580.
DR EnsemblPlants; AT1G14580.2; AT1G14580.2; AT1G14580.
DR GeneID; 838020; -.
DR Gramene; AT1G14580.1; AT1G14580.1; AT1G14580.
DR Gramene; AT1G14580.2; AT1G14580.2; AT1G14580.
DR KEGG; ath:AT1G14580; -.
DR Araport; AT1G14580; -.
DR TAIR; locus:2204503; AT1G14580.
DR eggNOG; KOG1721; Eukaryota.
DR HOGENOM; CLU_014578_3_0_1; -.
DR InParanoid; Q8RWX7; -.
DR OMA; AENNHPS; -.
DR PhylomeDB; Q8RWX7; -.
DR PRO; PR:Q8RWX7; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q8RWX7; baseline and differential.
DR Genevisible; Q8RWX7; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IDA:TAIR.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0008356; P:asymmetric cell division; IMP:TAIR.
DR GO; GO:0048364; P:root development; IGI:TAIR.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR Pfam; PF00096; zf-C2H2; 1.
DR SMART; SM00355; ZnF_C2H2; 3.
DR SUPFAM; SSF57667; SSF57667; 1.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 1.
PE 1: Evidence at protein level;
KW Chloroplast; DNA-binding; Metal-binding; Phosphoprotein; Plastid;
KW Reference proteome; Repeat; Transcription; Transcription regulation;
KW Transit peptide; Zinc; Zinc-finger.
FT TRANSIT 1..20
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 21..467
FT /note="Protein indeterminate-domain 6, chloroplastic"
FT /id="PRO_0000431542"
FT ZN_FING 82..104
FT /note="C2H2-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT ZN_FING 123..153
FT /note="C2H2-type 2"
FT /evidence="ECO:0000305"
FT ZN_FING 158..181
FT /note="C2H2-type 2; degenerate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT ZN_FING 185..208
FT /note="CCHC-type 2; atypical"
FT /evidence="ECO:0000305"
FT REGION 38..65
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 195..207
FT /note="SHR-binding"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT REGION 440..467
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 38..52
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 160
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 163
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 176
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 180
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 187
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 189
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 202
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT BINDING 206
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000250|UniProtKB:Q700D2"
FT MOD_RES 72
FT /note="Phosphoserine"
FT /evidence="ECO:0007744|PubMed:19376835"
SQ SEQUENCE 467 AA; 50636 MW; 50DC150870AFD245 CRC64;
MSSSYNTIAL SSTPTFLLSS AAAGPGPNNF NRQEAAMTMV QQQPTSSVAP PPKKRRNQPG
NPNPDAEVIA LSPKTIMATN RFLCEVCNKG FQREQNLQLH RRGHNLPWKL KQKSNKEVRR
KVYLCPEPSC VHHDPARALG DLTGIKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC
GTKEYRCDCG TIFSRRDSYI THRAFCDALI QESARNPTVS FTAMAAGGGG GARHGFYGGA
SSALSHNHFG NNPNSGFTPL AAAGYNLNRS SSDKFEDFVP QATNPNPGPT NFLMQCSPNQ
GLLAQNNQSL MNHHGLISLG DNNNNNHNFF NLAYFQDTKN SDQTGVPSLF TNGADNNGPS
ALLRGLTSSS SSSVVVNDFG DCDHGNLQGL MNSLAATTDQ QGRSPSLFDL HFANNLSMGG
SDRLTLDFLG VNGGIVSTVN GRGGRSGGPP LDAEMKFSHP NHPYGKA
