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IDHC_HUMAN
ID   IDHC_HUMAN              Reviewed;         414 AA.
AC   O75874; Q567U4; Q6FHQ6; Q7Z3V0; Q93090; Q9NTJ9; Q9UKW8;
DT   30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
DT   11-JUL-2002, sequence version 2.
DT   03-AUG-2022, entry version 222.
DE   RecName: Full=Isocitrate dehydrogenase [NADP] cytoplasmic;
DE            Short=IDH;
DE            Short=IDH1 {ECO:0000303|PubMed:19935646};
DE            EC=1.1.1.42 {ECO:0000269|PubMed:10521434, ECO:0000269|PubMed:19935646};
DE   AltName: Full=Cytosolic NADP-isocitrate dehydrogenase;
DE   AltName: Full=IDPc;
DE   AltName: Full=NADP(+)-specific ICDH;
DE   AltName: Full=Oxalosuccinate decarboxylase;
GN   Name=IDH1; Synonyms=PICD;
OS   Homo sapiens (Human).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
OX   NCBI_TaxID=9606;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RX   PubMed=9866202; DOI=10.1093/oxfordjournals.molbev.a025894;
RA   Nekrutenko A., Hillis D.M., Patton J.C., Bradley R.D., Baker R.J.;
RT   "Cytosolic isocitrate dehydrogenase in humans, mice, and voles and
RT   phylogenetic analysis of the enzyme family.";
RL   Mol. Biol. Evol. 15:1674-1684(1998).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION, FUNCTION, CATALYTIC
RP   ACTIVITY, AND BIOPHYSICOCHEMICAL PROPERTIES.
RX   PubMed=10521434; DOI=10.1074/jbc.274.43.30527;
RA   Geisbrecht B.V., Gould S.J.;
RT   "The human PICD gene encodes a cytoplasmic and peroxisomal NADP(+)-
RT   dependent isocitrate dehydrogenase.";
RL   J. Biol. Chem. 274:30527-30533(1999).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Kidney;
RX   PubMed=11230166; DOI=10.1101/gr.gr1547r;
RA   Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S.,
RA   Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J.,
RA   Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W.,
RA   Ottenwaelder B., Obermaier B., Tampe J., Heubner D., Wambutt R., Korn B.,
RA   Klein M., Poustka A.;
RT   "Towards a catalog of human genes and proteins: sequencing and analysis of
RT   500 novel complete protein coding human cDNAs.";
RL   Genome Res. 11:422-435(2001).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA   Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.;
RT   "Cloning of human full open reading frames in Gateway(TM) system entry
RT   vector (pDONR201).";
RL   Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Endometrium;
RX   PubMed=17974005; DOI=10.1186/1471-2164-8-399;
RA   Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U.,
RA   Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D.,
RA   Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A.,
RA   Wiemann S., Schupp I.;
RT   "The full-ORF clone resource of the German cDNA consortium.";
RL   BMC Genomics 8:399-399(2007).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=15815621; DOI=10.1038/nature03466;
RA   Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P.,
RA   Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C.,
RA   Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L.,
RA   Du H., Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A.,
RA   Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J.,
RA   Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M.,
RA   Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T.,
RA   Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S.,
RA   Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K.,
RA   McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C.,
RA   Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S.,
RA   Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C.,
RA   Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M.,
RA   Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C.,
RA   Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J.,
RA   Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E.,
RA   Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X.,
RA   Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M.,
RA   Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C.,
RA   Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S.,
RA   Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H.,
RA   Wilson R.K.;
RT   "Generation and annotation of the DNA sequences of human chromosomes 2 and
RT   4.";
RL   Nature 434:724-731(2005).
RN   [7]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA   Mural R.J., Istrail S., Sutton G., Florea L., Halpern A.L., Mobarry C.M.,
RA   Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J.,
RA   Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S.,
RA   Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H.,
RA   Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K.,
RA   Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D.,
RA   Hunkapiller M.W., Myers E.W., Venter J.C.;
RL   Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
RN   [8]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Lung, and Placenta;
RX   PubMed=15489334; DOI=10.1101/gr.2596504;
RG   The MGC Project Team;
RT   "The status, quality, and expansion of the NIH full-length cDNA project:
RT   the Mammalian Gene Collection (MGC).";
RL   Genome Res. 14:2121-2127(2004).
RN   [9]
RP   PROTEIN SEQUENCE OF 5-20; 30-49; 101-109; 120-132; 141-212; 223-233;
RP   250-270; 322-338 AND 389-400, AND IDENTIFICATION BY MASS SPECTROMETRY.
RC   TISSUE=Brain, Cajal-Retzius cell, and Fetal brain cortex;
RA   Lubec G., Afjehi-Sadat L., Chen W.-Q., Sun Y.;
RL   Submitted (DEC-2008) to UniProtKB.
RN   [10]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 100-253.
RA   Kullmann F., Vogt T., Welsh J., McClelland M.;
RT   "Differential gene expression in epithelial cells induced by bile salts:
RT   identification by RNA arbitrarily primed PCR.";
RL   Submitted (JUN-1996) to the EMBL/GenBank/DDBJ databases.
RN   [11]
RP   ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-321, AND IDENTIFICATION BY MASS
RP   SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=19608861; DOI=10.1126/science.1175371;
RA   Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C.,
RA   Olsen J.V., Mann M.;
RT   "Lysine acetylation targets protein complexes and co-regulates major
RT   cellular functions.";
RL   Science 325:834-840(2009).
RN   [12]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=21269460; DOI=10.1186/1752-0509-5-17;
RA   Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T.,
RA   Bennett K.L., Superti-Furga G., Colinge J.;
RT   "Initial characterization of the human central proteome.";
RL   BMC Syst. Biol. 5:17-17(2011).
RN   [13]
RP   ACETYLATION [LARGE SCALE ANALYSIS] AT SER-2, CLEAVAGE OF INITIATOR
RP   METHIONINE [LARGE SCALE ANALYSIS], AND IDENTIFICATION BY MASS SPECTROMETRY
RP   [LARGE SCALE ANALYSIS].
RX   PubMed=22814378; DOI=10.1073/pnas.1210303109;
RA   Van Damme P., Lasa M., Polevoda B., Gazquez C., Elosegui-Artola A.,
RA   Kim D.S., De Juan-Pardo E., Demeyer K., Hole K., Larrea E., Timmerman E.,
RA   Prieto J., Arnesen T., Sherman F., Gevaert K., Aldabe R.;
RT   "N-terminal acetylome analyses and functional insights of the N-terminal
RT   acetyltransferase NatB.";
RL   Proc. Natl. Acad. Sci. U.S.A. 109:12449-12454(2012).
RN   [14]
RP   PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-42, AND IDENTIFICATION BY
RP   MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC   TISSUE=Liver;
RX   PubMed=24275569; DOI=10.1016/j.jprot.2013.11.014;
RA   Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L.,
RA   Ye M., Zou H.;
RT   "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver
RT   phosphoproteome.";
RL   J. Proteomics 96:253-262(2014).
RN   [15]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=25944712; DOI=10.1002/pmic.201400617;
RA   Vaca Jacome A.S., Rabilloud T., Schaeffer-Reiss C., Rompais M., Ayoub D.,
RA   Lane L., Bairoch A., Van Dorsselaer A., Carapito C.;
RT   "N-terminome analysis of the human mitochondrial proteome.";
RL   Proteomics 15:2519-2524(2015).
RN   [16] {ECO:0007744|PDB:1T09, ECO:0007744|PDB:1T0L}
RP   X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) IN COMPLEXES WITH NADP; ISOCITRATE
RP   AND CALCIUM IONS, AND SUBUNIT.
RX   PubMed=15173171; DOI=10.1074/jbc.m404298200;
RA   Xu X., Zhao J., Xu Z., Peng B., Huang Q., Arnold E., Ding J.;
RT   "Structures of human cytosolic NADP-dependent isocitrate dehydrogenase
RT   reveal a novel self-regulatory mechanism of activity.";
RL   J. Biol. Chem. 279:33946-33957(2004).
RN   [17] {ECO:0007744|PDB:3INM}
RP   X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS) OF VARIANT HIS-132 IN COMPLEX WITH
RP   NADP AND ALPHA-KETOGLUTARATE, FUNCTION, CATALYTIC ACTIVITY, SUBUNIT,
RP   COFACTOR, BIOPHYSICOCHEMICAL PROPERTIES, CHARACTERIZATION OF VARIANTS
RP   CYS-132; HIS-132; LEU-132 AND SER-132, INVOLVEMENT IN DISEASE, AND
RP   INVOLVEMENT IN GLM.
RX   PubMed=19935646; DOI=10.1038/nature08617;
RA   Dang L., White D.W., Gross S., Bennett B.D., Bittinger M.A., Driggers E.M.,
RA   Fantin V.R., Jang H.G., Jin S., Keenan M.C., Marks K.M., Prins R.M.,
RA   Ward P.S., Yen K.E., Liau L.M., Rabinowitz J.D., Cantley L.C.,
RA   Thompson C.B., Vander Heiden M.G., Su S.M.;
RT   "Cancer-associated IDH1 mutations produce 2-hydroxyglutarate.";
RL   Nature 462:739-744(2009).
RN   [18]
RP   VARIANT [LARGE SCALE ANALYSIS] CYS-132.
RX   PubMed=16959974; DOI=10.1126/science.1133427;
RA   Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D.,
RA   Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P.,
RA   Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V.,
RA   Gazdar A.F., Hartigan J., Wu L., Liu C., Parmigiani G., Park B.H.,
RA   Bachman K.E., Papadopoulos N., Vogelstein B., Kinzler K.W.,
RA   Velculescu V.E.;
RT   "The consensus coding sequences of human breast and colorectal cancers.";
RL   Science 314:268-274(2006).
RN   [19]
RP   VARIANTS HIS-132 AND SER-132.
RX   PubMed=18772396; DOI=10.1126/science.1164382;
RA   Parsons D.W., Jones S., Zhang X., Lin J.C.-H., Leary R.J., Angenendt P.,
RA   Mankoo P., Carter H., Siu I.-M., Gallia G.L., Olivi A., McLendon R.,
RA   Rasheed B.A., Keir S., Nikolskaya T., Nikolsky Y., Busam D.A., Tekleab H.,
RA   Diaz L.A. Jr., Hartigan J., Smith D.R., Strausberg R.L., Marie S.K.N.,
RA   Shinjo S.M.O., Yan H., Riggins G.J., Bigner D.D., Karchin R.,
RA   Papadopoulos N., Parmigiani G., Vogelstein B., Velculescu V.E.,
RA   Kinzler K.W.;
RT   "An integrated genomic analysis of human glioblastoma multiforme.";
RL   Science 321:1807-1812(2008).
RN   [20]
RP   VARIANTS CYS-132; GLY-132 AND LEU-132, AND INVOLVEMENT IN GLM.
RX   PubMed=19117336; DOI=10.1002/humu.20937;
RA   Bleeker F.E., Lamba S., Leenstra S., Troost D., Hulsebos T.,
RA   Vandertop W.P., Frattini M., Molinari F., Knowles M., Cerrato A.,
RA   Rodolfo M., Scarpa A., Felicioni L., Buttitta F., Malatesta S.,
RA   Marchetti A., Bardelli A.;
RT   "IDH1 mutations at residue p.R132 (IDH1(R132)) occur frequently in high-
RT   grade gliomas but not in other solid tumors.";
RL   Hum. Mutat. 30:7-11(2009).
RN   [21]
RP   VARIANTS CYS-132; GLY-132 AND HIS-132, INVOLVEMENT IN DISEASE, AND
RP   CHARACTERIZATION OF VARIANT CYS-132.
RX   PubMed=26161668; DOI=10.1371/journal.pone.0131998;
RA   Jin Y., Elalaf H., Watanabe M., Tamaki S., Hineno S., Matsunaga K.,
RA   Woltjen K., Kobayashi Y., Nagata S., Ikeya M., Kato T. Jr., Okamoto T.,
RA   Matsuda S., Toguchida J.;
RT   "Mutant IDH1 Dysregulates the Differentiation of Mesenchymal Stem Cells in
RT   Association with Gene-Specific Histone Modifications to Cartilage- and
RT   Bone-Related Genes.";
RL   PLoS ONE 10:E0131998-E0131998(2015).
CC   -!- FUNCTION: Catalyzes the NADP(+)-dependent oxidative decarboxylation of
CC       isocitrate (D-threo-isocitrate) to 2-ketoglutarate (2-oxoglutarate),
CC       which is required by other enzymes such as the phytanoyl-CoA
CC       dioxygenase (PubMed:10521434, PubMed:19935646). Plays a critical role
CC       in the generation of NADPH, an important cofactor in many biosynthesis
CC       pathways (PubMed:10521434). May act as a corneal epithelial crystallin
CC       and may be involved in maintaining corneal epithelial transparency (By
CC       similarity). {ECO:0000250|UniProtKB:Q9XSG3,
CC       ECO:0000269|PubMed:10521434, ECO:0000269|PubMed:19935646,
CC       ECO:0000303|PubMed:10521434}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=D-threo-isocitrate + NADP(+) = 2-oxoglutarate + CO2 + NADPH;
CC         Xref=Rhea:RHEA:19629, ChEBI:CHEBI:15562, ChEBI:CHEBI:16526,
CC         ChEBI:CHEBI:16810, ChEBI:CHEBI:57783, ChEBI:CHEBI:58349; EC=1.1.1.42;
CC         Evidence={ECO:0000269|PubMed:10521434, ECO:0000269|PubMed:19935646};
CC       PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:19630;
CC         Evidence={ECO:0000269|PubMed:19935646};
CC   -!- COFACTOR:
CC       Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC         Evidence={ECO:0000269|PubMed:19935646};
CC       Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
CC         Evidence={ECO:0000269|PubMed:19935646};
CC       Note=Binds 1 Mg(2+) or Mn(2+) ion per subunit.
CC       {ECO:0000269|PubMed:19935646};
CC   -!- BIOPHYSICOCHEMICAL PROPERTIES:
CC       Kinetic parameters:
CC         KM=112 uM for NADP(+) {ECO:0000269|PubMed:10521434};
CC         KM=49 uM for NADP(+) {ECO:0000269|PubMed:19935646};
CC         KM=29 uM for magnesium chloride {ECO:0000269|PubMed:19935646};
CC         KM=76 uM for isocitrate {ECO:0000269|PubMed:10521434};
CC         KM=65 uM for isocitrate {ECO:0000269|PubMed:19935646};
CC   -!- SUBUNIT: Homodimer. {ECO:0000269|PubMed:15173171,
CC       ECO:0000269|PubMed:19935646}.
CC   -!- INTERACTION:
CC       O75874; P0DP23: CALM1; NbExp=7; IntAct=EBI-715695, EBI-25817233;
CC       O75874; P27797: CALR; NbExp=3; IntAct=EBI-715695, EBI-1049597;
CC       O75874; P36957: DLST; NbExp=3; IntAct=EBI-715695, EBI-351007;
CC       O75874; O75874: IDH1; NbExp=4; IntAct=EBI-715695, EBI-715695;
CC       O75874; Q8TDX7: NEK7; NbExp=3; IntAct=EBI-715695, EBI-1055945;
CC       O75874; P16284: PECAM1; NbExp=3; IntAct=EBI-715695, EBI-716404;
CC       O75874; P17612: PRKACA; NbExp=3; IntAct=EBI-715695, EBI-476586;
CC       O75874; P50454: SERPINH1; NbExp=3; IntAct=EBI-715695, EBI-350723;
CC       O75874; P37173: TGFBR2; NbExp=3; IntAct=EBI-715695, EBI-296151;
CC       O75874; Q05086-3: UBE3A; NbExp=3; IntAct=EBI-715695, EBI-11026619;
CC   -!- SUBCELLULAR LOCATION: Cytoplasm, cytosol {ECO:0000269|PubMed:10521434}.
CC       Peroxisome {ECO:0000269|PubMed:10521434}.
CC   -!- PTM: Acetylation at Lys-374 dramatically reduces catalytic activity.
CC       {ECO:0000250}.
CC   -!- DISEASE: Glioma (GLM) [MIM:137800]: Gliomas are benign or malignant
CC       central nervous system neoplasms derived from glial cells. They
CC       comprise astrocytomas and glioblastoma multiforme that are derived from
CC       astrocytes, oligodendrogliomas derived from oligodendrocytes and
CC       ependymomas derived from ependymocytes. {ECO:0000269|PubMed:19117336,
CC       ECO:0000269|PubMed:19935646}. Note=The gene represented in this entry
CC       is involved in disease pathogenesis. Mutations affecting Arg-132 are
CC       tissue-specific, and suggest that this residue plays a unique role in
CC       the development of high-grade gliomas. Mutations of Arg-132 to Cys,
CC       His, Leu or Ser abolish magnesium binding and abolish the conversion of
CC       isocitrate to alpha-ketoglutarate. Instead, alpha-ketoglutarate is
CC       converted to R(-)-2-hydroxyglutarate. Elevated levels of R(-)-2-
CC       hydroxyglutarate are correlated with an elevated risk of malignant
CC       brain tumors. {ECO:0000269|PubMed:19935646}.
CC   -!- DISEASE: Note=Genetic variations are associated with cartilaginous
CC       tumors such as enchondroma or chondrosarcoma. Mutations of Arg-132 to
CC       Cys, Gly or His abolish the conversion of isocitrate to alpha-
CC       ketoglutarate. Instead, alpha-ketoglutarate is converted to R(-)-2-
CC       hydroxyglutarate. {ECO:0000269|PubMed:26161668}.
CC   -!- SIMILARITY: Belongs to the isocitrate and isopropylmalate
CC       dehydrogenases family. {ECO:0000305}.
CC   -!- WEB RESOURCE: Name=Wikipedia; Note=Isocitrate dehydrogenase entry;
CC       URL="https://en.wikipedia.org/wiki/Isocitrate_dehydrogenase";
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DR   EMBL; AF020038; AAD02918.1; -; mRNA.
DR   EMBL; AF113917; AAD29284.1; -; mRNA.
DR   EMBL; AL136702; CAB66637.1; -; mRNA.
DR   EMBL; CR541695; CAG46496.1; -; mRNA.
DR   EMBL; BX537411; CAD97653.1; -; mRNA.
DR   EMBL; AC016697; AAX93221.1; -; Genomic_DNA.
DR   EMBL; CH471063; EAW70439.1; -; Genomic_DNA.
DR   EMBL; BC012846; AAH12846.1; -; mRNA.
DR   EMBL; BC093020; AAH93020.1; -; mRNA.
DR   EMBL; U62389; AAB17375.1; -; mRNA.
DR   CCDS; CCDS2381.1; -.
DR   PIR; T46280; T46280.
DR   RefSeq; NP_001269315.1; NM_001282386.1.
DR   RefSeq; NP_001269316.1; NM_001282387.1.
DR   RefSeq; NP_005887.2; NM_005896.3.
DR   PDB; 1T09; X-ray; 2.70 A; A/B=1-414.
DR   PDB; 1T0L; X-ray; 2.41 A; A/B/C/D=1-414.
DR   PDB; 3INM; X-ray; 2.10 A; A/B/C=1-414.
DR   PDB; 3MAP; X-ray; 2.80 A; A/B=1-414.
DR   PDB; 3MAR; X-ray; 3.41 A; A/B=1-414.
DR   PDB; 3MAS; X-ray; 3.20 A; A/B=1-414.
DR   PDB; 4I3K; X-ray; 3.31 A; A/B=1-414.
DR   PDB; 4I3L; X-ray; 3.29 A; A/B=1-414.
DR   PDB; 4KZO; X-ray; 2.20 A; A/B/C=1-414.
DR   PDB; 4L03; X-ray; 2.10 A; A/B/C=1-414.
DR   PDB; 4L04; X-ray; 2.87 A; A/B/C/D/E/F=1-414.
DR   PDB; 4L06; X-ray; 2.28 A; A/B/C/D/E/F=1-414.
DR   PDB; 4UMX; X-ray; 1.88 A; A/B=1-414.
DR   PDB; 4UMY; X-ray; 2.07 A; A/B=1-414.
DR   PDB; 4XRX; X-ray; 3.20 A; A/B=1-414.
DR   PDB; 4XS3; X-ray; 3.29 A; A/B=1-414.
DR   PDB; 5DE1; X-ray; 2.25 A; A/B=2-414.
DR   PDB; 5GIR; X-ray; 1.93 A; C/D=126-137.
DR   PDB; 5K10; EM; 3.80 A; A/B=3-413.
DR   PDB; 5K11; EM; 3.80 A; A/B=3-413.
DR   PDB; 5L57; X-ray; 2.69 A; A=1-414.
DR   PDB; 5L58; X-ray; 3.04 A; A=1-414.
DR   PDB; 5LGE; X-ray; 2.70 A; A/B/C/D=1-414.
DR   PDB; 5SUN; X-ray; 2.48 A; A/B=1-414.
DR   PDB; 5SVF; X-ray; 2.34 A; A/B/C/D=1-414.
DR   PDB; 5TQH; X-ray; 2.20 A; A/B/C/D=1-414.
DR   PDB; 5YFM; X-ray; 2.40 A; A/B/C=1-414.
DR   PDB; 5YFN; X-ray; 2.50 A; A/B=1-414.
DR   PDB; 6ADG; X-ray; 3.00 A; A/B/C=1-414.
DR   PDB; 6B0Z; X-ray; 2.33 A; A/B/C/D=1-414.
DR   PDB; 6BKX; X-ray; 1.65 A; A/B/C=1-414.
DR   PDB; 6BKY; X-ray; 2.17 A; A/B/C/D/E/F=1-414.
DR   PDB; 6BKZ; X-ray; 2.01 A; A/B=1-414.
DR   PDB; 6BL0; X-ray; 2.17 A; A/B/C=1-414.
DR   PDB; 6BL1; X-ray; 2.02 A; A/B/C=1-414.
DR   PDB; 6BL2; X-ray; 1.92 A; A/B/C=1-414.
DR   PDB; 6IO0; X-ray; 2.20 A; A/B=1-414.
DR   PDB; 6O2Y; X-ray; 2.80 A; A/B/C=1-414.
DR   PDB; 6O2Z; X-ray; 2.50 A; A/B=1-414.
DR   PDB; 6PAY; X-ray; 2.20 A; A/B/C/D=1-414.
DR   PDB; 6Q6F; X-ray; 3.30 A; A/B=1-414.
DR   PDB; 6U4J; X-ray; 2.11 A; A/B=1-414.
DR   PDB; 6VEI; X-ray; 2.10 A; A/B=1-414.
DR   PDB; 6VG0; X-ray; 2.66 A; A/B/C=1-414.
DR   PDBsum; 1T09; -.
DR   PDBsum; 1T0L; -.
DR   PDBsum; 3INM; -.
DR   PDBsum; 3MAP; -.
DR   PDBsum; 3MAR; -.
DR   PDBsum; 3MAS; -.
DR   PDBsum; 4I3K; -.
DR   PDBsum; 4I3L; -.
DR   PDBsum; 4KZO; -.
DR   PDBsum; 4L03; -.
DR   PDBsum; 4L04; -.
DR   PDBsum; 4L06; -.
DR   PDBsum; 4UMX; -.
DR   PDBsum; 4UMY; -.
DR   PDBsum; 4XRX; -.
DR   PDBsum; 4XS3; -.
DR   PDBsum; 5DE1; -.
DR   PDBsum; 5GIR; -.
DR   PDBsum; 5K10; -.
DR   PDBsum; 5K11; -.
DR   PDBsum; 5L57; -.
DR   PDBsum; 5L58; -.
DR   PDBsum; 5LGE; -.
DR   PDBsum; 5SUN; -.
DR   PDBsum; 5SVF; -.
DR   PDBsum; 5TQH; -.
DR   PDBsum; 5YFM; -.
DR   PDBsum; 5YFN; -.
DR   PDBsum; 6ADG; -.
DR   PDBsum; 6B0Z; -.
DR   PDBsum; 6BKX; -.
DR   PDBsum; 6BKY; -.
DR   PDBsum; 6BKZ; -.
DR   PDBsum; 6BL0; -.
DR   PDBsum; 6BL1; -.
DR   PDBsum; 6BL2; -.
DR   PDBsum; 6IO0; -.
DR   PDBsum; 6O2Y; -.
DR   PDBsum; 6O2Z; -.
DR   PDBsum; 6PAY; -.
DR   PDBsum; 6Q6F; -.
DR   PDBsum; 6U4J; -.
DR   PDBsum; 6VEI; -.
DR   PDBsum; 6VG0; -.
DR   AlphaFoldDB; O75874; -.
DR   SMR; O75874; -.
DR   BioGRID; 109643; 95.
DR   CORUM; O75874; -.
DR   DIP; DIP-59311N; -.
DR   IntAct; O75874; 31.
DR   MINT; O75874; -.
DR   STRING; 9606.ENSP00000390265; -.
DR   BindingDB; O75874; -.
DR   ChEMBL; CHEMBL2007625; -.
DR   DrugBank; DB09374; Indocyanine green acid form.
DR   DrugBank; DB01727; Isocitric Acid.
DR   DrugBank; DB14568; Ivosidenib.
DR   DrugBank; DB03461; Nicotinamide adenine dinucleotide phosphate.
DR   DrugCentral; O75874; -.
DR   GuidetoPHARMACOLOGY; 2884; -.
DR   GlyGen; O75874; 1 site, 1 O-linked glycan (1 site).
DR   iPTMnet; O75874; -.
DR   MetOSite; O75874; -.
DR   PhosphoSitePlus; O75874; -.
DR   SwissPalm; O75874; -.
DR   BioMuta; IDH1; -.
DR   OGP; O75874; -.
DR   REPRODUCTION-2DPAGE; IPI00027223; -.
DR   UCD-2DPAGE; O75874; -.
DR   EPD; O75874; -.
DR   jPOST; O75874; -.
DR   MassIVE; O75874; -.
DR   PaxDb; O75874; -.
DR   PeptideAtlas; O75874; -.
DR   PRIDE; O75874; -.
DR   ProteomicsDB; 50234; -.
DR   ABCD; O75874; 4 sequenced antibodies.
DR   Antibodypedia; 34198; 988 antibodies from 47 providers.
DR   DNASU; 3417; -.
DR   Ensembl; ENST00000345146.7; ENSP00000260985.2; ENSG00000138413.14.
DR   Ensembl; ENST00000415913.5; ENSP00000390265.1; ENSG00000138413.14.
DR   Ensembl; ENST00000446179.5; ENSP00000410513.1; ENSG00000138413.14.
DR   GeneID; 3417; -.
DR   KEGG; hsa:3417; -.
DR   MANE-Select; ENST00000345146.7; ENSP00000260985.2; NM_005896.4; NP_005887.2.
DR   CTD; 3417; -.
DR   DisGeNET; 3417; -.
DR   GeneCards; IDH1; -.
DR   HGNC; HGNC:5382; IDH1.
DR   HPA; ENSG00000138413; Tissue enhanced (liver).
DR   MalaCards; IDH1; -.
DR   MIM; 137800; phenotype.
DR   MIM; 147700; gene.
DR   neXtProt; NX_O75874; -.
DR   OpenTargets; ENSG00000138413; -.
DR   Orphanet; 251579; Giant cell glioblastoma.
DR   Orphanet; 251576; Gliosarcoma.
DR   Orphanet; 163634; Maffucci syndrome.
DR   Orphanet; 99646; Metaphyseal chondromatosis with D-2-hydroxyglutaric aciduria.
DR   Orphanet; 296; Ollier disease.
DR   PharmGKB; PA29630; -.
DR   VEuPathDB; HostDB:ENSG00000138413; -.
DR   eggNOG; KOG1526; Eukaryota.
DR   GeneTree; ENSGT00390000012547; -.
DR   HOGENOM; CLU_023296_1_1_1; -.
DR   InParanoid; O75874; -.
DR   OMA; HGTVQRH; -.
DR   OrthoDB; 511880at2759; -.
DR   PhylomeDB; O75874; -.
DR   TreeFam; TF300428; -.
DR   BioCyc; MetaCyc:HS06502-MON; -.
DR   BRENDA; 1.1.1.42; 2681.
DR   PathwayCommons; O75874; -.
DR   Reactome; R-HSA-2978092; Abnormal conversion of 2-oxoglutarate to 2-hydroxyglutarate.
DR   Reactome; R-HSA-389542; NADPH regeneration.
DR   Reactome; R-HSA-6798695; Neutrophil degranulation.
DR   Reactome; R-HSA-9033241; Peroxisomal protein import.
DR   Reactome; R-HSA-9759194; Nuclear events mediated by NFE2L2.
DR   SABIO-RK; O75874; -.
DR   SignaLink; O75874; -.
DR   SIGNOR; O75874; -.
DR   BioGRID-ORCS; 3417; 19 hits in 1070 CRISPR screens.
DR   ChiTaRS; IDH1; human.
DR   EvolutionaryTrace; O75874; -.
DR   GeneWiki; IDH1; -.
DR   GenomeRNAi; 3417; -.
DR   Pharos; O75874; Tclin.
DR   PRO; PR:O75874; -.
DR   Proteomes; UP000005640; Chromosome 2.
DR   RNAct; O75874; protein.
DR   Bgee; ENSG00000138413; Expressed in corpus epididymis and 210 other tissues.
DR   ExpressionAtlas; O75874; baseline and differential.
DR   Genevisible; O75874; HS.
DR   GO; GO:0005737; C:cytoplasm; IDA:LIFEdb.
DR   GO; GO:0005829; C:cytosol; IDA:UniProtKB.
DR   GO; GO:0070062; C:extracellular exosome; HDA:UniProtKB.
DR   GO; GO:0005576; C:extracellular region; TAS:Reactome.
DR   GO; GO:1904813; C:ficolin-1-rich granule lumen; TAS:Reactome.
DR   GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR   GO; GO:0005782; C:peroxisomal matrix; TAS:Reactome.
DR   GO; GO:0005777; C:peroxisome; IDA:UniProtKB.
DR   GO; GO:0034774; C:secretory granule lumen; TAS:Reactome.
DR   GO; GO:1904724; C:tertiary granule lumen; TAS:Reactome.
DR   GO; GO:0045296; F:cadherin binding; HDA:BHF-UCL.
DR   GO; GO:0042802; F:identical protein binding; IPI:IntAct.
DR   GO; GO:0004450; F:isocitrate dehydrogenase (NADP+) activity; IDA:UniProtKB.
DR   GO; GO:0000287; F:magnesium ion binding; IDA:UniProtKB.
DR   GO; GO:0051287; F:NAD binding; IEA:InterPro.
DR   GO; GO:0050661; F:NADP binding; IEA:Ensembl.
DR   GO; GO:0042803; F:protein homodimerization activity; IPI:UniProtKB.
DR   GO; GO:0006103; P:2-oxoglutarate metabolic process; IDA:UniProtKB.
DR   GO; GO:0008585; P:female gonad development; IEA:Ensembl.
DR   GO; GO:0006749; P:glutathione metabolic process; IEA:Ensembl.
DR   GO; GO:0006097; P:glyoxylate cycle; IEA:UniProtKB-KW.
DR   GO; GO:0006102; P:isocitrate metabolic process; IDA:UniProtKB.
DR   GO; GO:0006739; P:NADP metabolic process; IBA:GO_Central.
DR   GO; GO:0071071; P:regulation of phospholipid biosynthetic process; IEA:Ensembl.
DR   GO; GO:0060696; P:regulation of phospholipid catabolic process; IEA:Ensembl.
DR   GO; GO:0006979; P:response to oxidative stress; IEA:Ensembl.
DR   GO; GO:0048545; P:response to steroid hormone; IEA:Ensembl.
DR   GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-KW.
DR   InterPro; IPR019818; IsoCit/isopropylmalate_DH_CS.
DR   InterPro; IPR004790; Isocitrate_DH_NADP.
DR   InterPro; IPR024084; IsoPropMal-DH-like_dom.
DR   PANTHER; PTHR11822; PTHR11822; 1.
DR   Pfam; PF00180; Iso_dh; 1.
DR   PIRSF; PIRSF000108; IDH_NADP; 1.
DR   SMART; SM01329; Iso_dh; 1.
DR   TIGRFAMs; TIGR00127; nadp_idh_euk; 1.
DR   PROSITE; PS00470; IDH_IMDH; 1.
PE   1: Evidence at protein level;
KW   3D-structure; Acetylation; Cytoplasm; Direct protein sequencing;
KW   Glyoxylate bypass; Magnesium; Manganese; Metal-binding; NADP;
KW   Oxidoreductase; Peroxisome; Phosphoprotein; Reference proteome;
KW   Tricarboxylic acid cycle.
FT   INIT_MET        1
FT                   /note="Removed"
FT                   /evidence="ECO:0007744|PubMed:22814378"
FT   CHAIN           2..414
FT                   /note="Isocitrate dehydrogenase [NADP] cytoplasmic"
FT                   /id="PRO_0000083575"
FT   BINDING         75..77
FT                   /ligand="NADP(+)"
FT                   /ligand_id="ChEBI:CHEBI:58349"
FT                   /evidence="ECO:0000269|PubMed:15173171,
FT                   ECO:0000269|PubMed:19935646, ECO:0007744|PDB:1T09,
FT                   ECO:0007744|PDB:1T0L, ECO:0007744|PDB:3INM,
FT                   ECO:0007744|PDB:3MAP, ECO:0007744|PDB:3MAR,
FT                   ECO:0007744|PDB:3MAS, ECO:0007744|PDB:4I3K,
FT                   ECO:0007744|PDB:4I3L, ECO:0007744|PDB:4KZO,
FT                   ECO:0007744|PDB:4L03, ECO:0007744|PDB:4L04,
FT                   ECO:0007744|PDB:4L06, ECO:0007744|PDB:4UMX,
FT                   ECO:0007744|PDB:4UMY, ECO:0007744|PDB:4XRX,
FT                   ECO:0007744|PDB:4XS3, ECO:0007744|PDB:5DE1,
FT                   ECO:0007744|PDB:5L57, ECO:0007744|PDB:5L58,
FT                   ECO:0007744|PDB:5LGE, ECO:0007744|PDB:5SUN,
FT                   ECO:0007744|PDB:5SVF, ECO:0007744|PDB:5TQH"
FT   BINDING         77
FT                   /ligand="substrate"
FT                   /ligand_note="ligand shared between two neighboring
FT                   subunits"
FT                   /note="in other chain"
FT                   /evidence="ECO:0000269|PubMed:15173171,
FT                   ECO:0007744|PDB:1T0L"
FT   BINDING         82
FT                   /ligand="NADP(+)"
FT                   /ligand_id="ChEBI:CHEBI:58349"
FT                   /evidence="ECO:0000269|PubMed:15173171,
FT                   ECO:0000269|PubMed:19935646, ECO:0007744|PDB:1T09,
FT                   ECO:0007744|PDB:1T0L, ECO:0007744|PDB:3INM,
FT                   ECO:0007744|PDB:3MAP, ECO:0007744|PDB:3MAR,
FT                   ECO:0007744|PDB:3MAS, ECO:0007744|PDB:4I3K,
FT                   ECO:0007744|PDB:4I3L, ECO:0007744|PDB:4KZO,
FT                   ECO:0007744|PDB:4L03, ECO:0007744|PDB:4L04,
FT                   ECO:0007744|PDB:4L06, ECO:0007744|PDB:4UMX,
FT                   ECO:0007744|PDB:4UMY, ECO:0007744|PDB:4XRX,
FT                   ECO:0007744|PDB:4XS3, ECO:0007744|PDB:5DE1,
FT                   ECO:0007744|PDB:5L57, ECO:0007744|PDB:5LGE,
FT                   ECO:0007744|PDB:5SUN, ECO:0007744|PDB:5SVF,
FT                   ECO:0007744|PDB:5TQH"
FT   BINDING         94..100
FT                   /ligand="substrate"
FT                   /ligand_note="ligand shared between two neighboring
FT                   subunits"
FT                   /note="in other chain"
FT                   /evidence="ECO:0000269|PubMed:15173171,
FT                   ECO:0007744|PDB:1T0L"
FT   BINDING         109
FT                   /ligand="substrate"
FT                   /ligand_note="ligand shared between two neighboring
FT                   subunits"
FT                   /note="in other chain"
FT                   /evidence="ECO:0000269|PubMed:15173171,
FT                   ECO:0007744|PDB:1T0L"
FT   BINDING         132
FT                   /ligand="substrate"
FT                   /ligand_note="ligand shared between two neighboring
FT                   subunits"
FT                   /note="in other chain"
FT                   /evidence="ECO:0000269|PubMed:15173171,
FT                   ECO:0007744|PDB:1T0L"
FT   BINDING         212
FT                   /ligand="substrate"
FT                   /ligand_note="ligand shared between two neighboring
FT                   subunits"
FT                   /evidence="ECO:0000269|PubMed:15173171,
FT                   ECO:0007744|PDB:1T0L"
FT   BINDING         252
FT                   /ligand="Mn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29035"
FT                   /ligand_note="ligand shared between two neighboring
FT                   subunits"
FT                   /evidence="ECO:0000305|PubMed:15173171,
FT                   ECO:0000305|PubMed:19935646, ECO:0007744|PDB:1T0L,
FT                   ECO:0007744|PDB:3INM"
FT   BINDING         260
FT                   /ligand="NADP(+)"
FT                   /ligand_id="ChEBI:CHEBI:58349"
FT                   /evidence="ECO:0000269|PubMed:15173171,
FT                   ECO:0000269|PubMed:19935646, ECO:0007744|PDB:1T0L,
FT                   ECO:0007744|PDB:3INM"
FT   BINDING         275
FT                   /ligand="Mn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29035"
FT                   /ligand_note="ligand shared between two neighboring
FT                   subunits"
FT                   /note="in other chain"
FT                   /evidence="ECO:0000305|PubMed:15173171,
FT                   ECO:0000305|PubMed:19935646, ECO:0007744|PDB:1T0L,
FT                   ECO:0007744|PDB:3INM"
FT   BINDING         279
FT                   /ligand="Mn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29035"
FT                   /ligand_note="ligand shared between two neighboring
FT                   subunits"
FT                   /note="in other chain"
FT                   /evidence="ECO:0000305|PubMed:15173171,
FT                   ECO:0000305|PubMed:19935646, ECO:0007744|PDB:1T0L,
FT                   ECO:0007744|PDB:3INM"
FT   BINDING         310..315
FT                   /ligand="NADP(+)"
FT                   /ligand_id="ChEBI:CHEBI:58349"
FT                   /evidence="ECO:0000269|PubMed:15173171,
FT                   ECO:0000269|PubMed:19935646, ECO:0007744|PDB:1T09,
FT                   ECO:0007744|PDB:1T0L, ECO:0007744|PDB:3INM,
FT                   ECO:0007744|PDB:3MAP, ECO:0007744|PDB:3MAR,
FT                   ECO:0007744|PDB:3MAS, ECO:0007744|PDB:4I3K,
FT                   ECO:0007744|PDB:4I3L, ECO:0007744|PDB:4KZO,
FT                   ECO:0007744|PDB:4L03, ECO:0007744|PDB:4L04,
FT                   ECO:0007744|PDB:4L06, ECO:0007744|PDB:4UMX,
FT                   ECO:0007744|PDB:4UMY, ECO:0007744|PDB:4XRX,
FT                   ECO:0007744|PDB:4XS3, ECO:0007744|PDB:5DE1,
FT                   ECO:0007744|PDB:5L57, ECO:0007744|PDB:5L58,
FT                   ECO:0007744|PDB:5LGE, ECO:0007744|PDB:5SUN,
FT                   ECO:0007744|PDB:5SVF, ECO:0007744|PDB:5TQH"
FT   BINDING         328
FT                   /ligand="NADP(+)"
FT                   /ligand_id="ChEBI:CHEBI:58349"
FT                   /evidence="ECO:0000269|PubMed:15173171,
FT                   ECO:0000269|PubMed:19935646, ECO:0007744|PDB:1T09,
FT                   ECO:0007744|PDB:1T0L, ECO:0007744|PDB:3INM,
FT                   ECO:0007744|PDB:3MAP, ECO:0007744|PDB:3MAR,
FT                   ECO:0007744|PDB:3MAS, ECO:0007744|PDB:4I3K,
FT                   ECO:0007744|PDB:4I3L, ECO:0007744|PDB:4KZO,
FT                   ECO:0007744|PDB:4L03, ECO:0007744|PDB:4L04,
FT                   ECO:0007744|PDB:4L06, ECO:0007744|PDB:4UMX,
FT                   ECO:0007744|PDB:4UMY, ECO:0007744|PDB:4XRX,
FT                   ECO:0007744|PDB:4XS3, ECO:0007744|PDB:5DE1,
FT                   ECO:0007744|PDB:5L57, ECO:0007744|PDB:5L58,
FT                   ECO:0007744|PDB:5LGE, ECO:0007744|PDB:5SUN,
FT                   ECO:0007744|PDB:5SVF, ECO:0007744|PDB:5TQH"
FT   SITE            139
FT                   /note="Critical for catalysis"
FT   SITE            212
FT                   /note="Critical for catalysis"
FT   MOD_RES         2
FT                   /note="N-acetylserine"
FT                   /evidence="ECO:0007744|PubMed:22814378"
FT   MOD_RES         42
FT                   /note="Phosphotyrosine"
FT                   /evidence="ECO:0007744|PubMed:24275569"
FT   MOD_RES         81
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0000250|UniProtKB:O88844"
FT   MOD_RES         126
FT                   /note="N6-succinyllysine"
FT                   /evidence="ECO:0000250|UniProtKB:O88844"
FT   MOD_RES         224
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0000250|UniProtKB:O88844"
FT   MOD_RES         233
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0000250|UniProtKB:O88844"
FT   MOD_RES         243
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0000250|UniProtKB:O88844"
FT   MOD_RES         321
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0007744|PubMed:19608861"
FT   MOD_RES         389
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:O88844"
FT   MOD_RES         400
FT                   /note="N6-succinyllysine"
FT                   /evidence="ECO:0000250|UniProtKB:O88844"
FT   VARIANT         132
FT                   /note="R -> C (in colorectal cancer and glioma samples;
FT                   glioblastoma multiforme; somatic mutation; found in
FT                   patients with cartilaginous tumors; abolishes magnesium
FT                   binding and alters enzyme activity so that isocitrate is no
FT                   longer converted to alpha-ketoglutarate but instead alpha-
FT                   ketoglutarate is converted to R(-)-2-hydroxyglutarate;
FT                   induces histone methylation; enhances expression of
FT                   chondrocyte-related genes; disturbs the formation of
FT                   cartilaginous matrix; inhibits osteogenic differentiation;
FT                   dbSNP:rs121913499)"
FT                   /evidence="ECO:0000269|PubMed:16959974,
FT                   ECO:0000269|PubMed:19117336, ECO:0000269|PubMed:19935646,
FT                   ECO:0000269|PubMed:26161668"
FT                   /id="VAR_036013"
FT   VARIANT         132
FT                   /note="R -> G (in a glioma sample; glioblastoma multiforme;
FT                   somatic mutation; found in patients with cartilaginous
FT                   tumors; dbSNP:rs121913499)"
FT                   /evidence="ECO:0000269|PubMed:19117336,
FT                   ECO:0000269|PubMed:26161668"
FT                   /id="VAR_055454"
FT   VARIANT         132
FT                   /note="R -> H (in a glioma sample; glioblastoma multiforme;
FT                   somatic mutation; found in patients with cartilaginous
FT                   tumors; abolishes magnesium binding and alters enzyme
FT                   activity so that isocitrate is no longer converted to
FT                   alpha-ketoglutarate but instead alpha-ketoglutarate is
FT                   converted to R(-)-2-hydroxyglutarate; dbSNP:rs121913500)"
FT                   /evidence="ECO:0000269|PubMed:18772396,
FT                   ECO:0000269|PubMed:19935646, ECO:0000269|PubMed:26161668"
FT                   /id="VAR_055455"
FT   VARIANT         132
FT                   /note="R -> L (in a glioma sample; glioblastoma multiforme;
FT                   somatic mutation; abolishes magnesium binding and alters
FT                   enzyme activity so that isocitrate is no longer converted
FT                   to alpha-ketoglutarate but instead alpha-ketoglutarate is
FT                   converted to R(-)-2-hydroxyglutarate; dbSNP:rs121913500)"
FT                   /evidence="ECO:0000269|PubMed:19117336,
FT                   ECO:0000269|PubMed:19935646"
FT                   /id="VAR_055456"
FT   VARIANT         132
FT                   /note="R -> S (in a glioma sample; glioblastoma multiforme;
FT                   somatic mutation; abolishes magnesium binding and alters
FT                   enzyme activity so that isocitrate is no longer converted
FT                   to alpha-ketoglutarate but instead alpha-ketoglutarate is
FT                   converted to R(-)-2-hydroxyglutarate; dbSNP:rs121913499)"
FT                   /evidence="ECO:0000269|PubMed:18772396,
FT                   ECO:0000269|PubMed:19935646"
FT                   /id="VAR_055457"
FT   VARIANT         178
FT                   /note="V -> I (in dbSNP:rs34218846)"
FT                   /id="VAR_049780"
FT   CONFLICT        32
FT                   /note="F -> I (in Ref. 3; CAB66637)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        126
FT                   /note="K -> E (in Ref. 3; CAB66637)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        172
FT                   /note="F -> S (in Ref. 5; CAD97653)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        174
FT                   /note="E -> G (in Ref. 5; CAD97653)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        218
FT                   /note="K -> I (in Ref. 1; AAD02918)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        307
FT                   /note="A -> S (in Ref. 6; AAH93020)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        329
FT                   /note="P -> L (in Ref. 1; AAD02918)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        381
FT                   /note="K -> R (in Ref. 1; AAD02918)"
FT                   /evidence="ECO:0000305"
FT   STRAND          5..14
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           17..30
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   TURN            31..34
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          35..43
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           46..51
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   TURN            52..54
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           55..67
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          68..72
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           80..86
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           95..103
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          106..111
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          115..117
FT                   /evidence="ECO:0007829|PDB:6ADG"
FT   STRAND          120..123
FT                   /evidence="ECO:0007829|PDB:6PAY"
FT   STRAND          128..133
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           137..140
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          142..146
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          148..156
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          165..172
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          173..175
FT                   /evidence="ECO:0007829|PDB:6ADG"
FT   STRAND          177..181
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          182..184
FT                   /evidence="ECO:0007829|PDB:3MAR"
FT   HELIX           186..203
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          207..211
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   TURN            213..215
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          216..218
FT                   /evidence="ECO:0007829|PDB:6Q6F"
FT   HELIX           219..234
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           236..241
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          246..250
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           251..260
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          265..269
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           271..285
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           288..290
FT                   /evidence="ECO:0007829|PDB:4UMX"
FT   STRAND          291..296
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   STRAND          303..306
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           313..320
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           330..347
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           350..368
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           374..381
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           383..385
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           388..390
FT                   /evidence="ECO:0007829|PDB:6BKX"
FT   HELIX           394..414
FT                   /evidence="ECO:0007829|PDB:6BKX"
SQ   SEQUENCE   414 AA;  46659 MW;  60428B0B6E5851DC CRC64;
     MSKKISGGSV VEMQGDEMTR IIWELIKEKL IFPYVELDLH SYDLGIENRD ATNDQVTKDA
     AEAIKKHNVG VKCATITPDE KRVEEFKLKQ MWKSPNGTIR NILGGTVFRE AIICKNIPRL
     VSGWVKPIII GRHAYGDQYR ATDFVVPGPG KVEITYTPSD GTQKVTYLVH NFEEGGGVAM
     GMYNQDKSIE DFAHSSFQMA LSKGWPLYLS TKNTILKKYD GRFKDIFQEI YDKQYKSQFE
     AQKIWYEHRL IDDMVAQAMK SEGGFIWACK NYDGDVQSDS VAQGYGSLGM MTSVLVCPDG
     KTVEAEAAHG TVTRHYRMYQ KGQETSTNPI ASIFAWTRGL AHRAKLDNNK ELAFFANALE
     EVSIETIEAG FMTKDLAACI KGLPNVQRSD YLNTFEFMDK LGENLKIKLA QAKL
 
 
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