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IDH_CORGL
ID   IDH_CORGL               Reviewed;         738 AA.
AC   P50216;
DT   01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-1996, sequence version 1.
DT   03-AUG-2022, entry version 128.
DE   RecName: Full=Isocitrate dehydrogenase [NADP];
DE            Short=IDH;
DE            EC=1.1.1.42;
DE   AltName: Full=Oxalosuccinate decarboxylase;
GN   Name=icd; OrderedLocusNames=Cgl0664, cg0766;
OS   Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 /
OS   JCM 1318 / LMG 3730 / NCIMB 10025).
OC   Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae;
OC   Corynebacterium.
OX   NCBI_TaxID=196627;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB
RC   10025;
RX   PubMed=7836312; DOI=10.1128/jb.177.3.774-782.1995;
RA   Eikmanns B.J., Rittmann D., Sahm H.;
RT   "Cloning, sequence analysis, expression, and inactivation of the
RT   Corynebacterium glutamicum icd gene encoding isocitrate dehydrogenase and
RT   biochemical characterization of the enzyme.";
RL   J. Bacteriol. 177:774-782(1995).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB
RC   10025;
RX   PubMed=12743753; DOI=10.1007/s00253-003-1328-1;
RA   Ikeda M., Nakagawa S.;
RT   "The Corynebacterium glutamicum genome: features and impacts on
RT   biotechnological processes.";
RL   Appl. Microbiol. Biotechnol. 62:99-109(2003).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB
RC   10025;
RX   PubMed=12948626; DOI=10.1016/s0168-1656(03)00154-8;
RA   Kalinowski J., Bathe B., Bartels D., Bischoff N., Bott M., Burkovski A.,
RA   Dusch N., Eggeling L., Eikmanns B.J., Gaigalat L., Goesmann A.,
RA   Hartmann M., Huthmacher K., Kraemer R., Linke B., McHardy A.C., Meyer F.,
RA   Moeckel B., Pfefferle W., Puehler A., Rey D.A., Rueckert C., Rupp O.,
RA   Sahm H., Wendisch V.F., Wiegraebe I., Tauch A.;
RT   "The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its
RT   impact on the production of L-aspartate-derived amino acids and vitamins.";
RL   J. Biotechnol. 104:5-25(2003).
RN   [4]
RP   X-RAY CRYSTALLOGRAPHY (1.75 ANGSTROMS) IN COMPLEX WITH MAGNESIUM, AND
RP   SUBUNIT.
RX   PubMed=16416443; DOI=10.1002/prot.20867;
RA   Imabayashi F., Aich S., Prasad L., Delbaere L.T.;
RT   "Substrate-free structure of a monomeric NADP isocitrate dehydrogenase: an
RT   open conformation phylogenetic relationship of isocitrate dehydrogenase.";
RL   Proteins 63:100-112(2006).
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=D-threo-isocitrate + NADP(+) = 2-oxoglutarate + CO2 + NADPH;
CC         Xref=Rhea:RHEA:19629, ChEBI:CHEBI:15562, ChEBI:CHEBI:16526,
CC         ChEBI:CHEBI:16810, ChEBI:CHEBI:57783, ChEBI:CHEBI:58349; EC=1.1.1.42;
CC   -!- COFACTOR:
CC       Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC       Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
CC       Note=Binds 1 Mg(2+) or Mn(2+) ion per subunit.;
CC   -!- ACTIVITY REGULATION: Weakly inhibited by oxaloacetate, 2-oxoglutarate,
CC       and citrate. Severely inhibited by oxaloacetate plus glyoxylate.
CC   -!- SUBUNIT: Monomer. {ECO:0000269|PubMed:16416443}.
CC   -!- SIMILARITY: Belongs to the monomeric-type IDH family. {ECO:0000305}.
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DR   EMBL; X71489; CAA50590.1; -; Genomic_DNA.
DR   EMBL; BA000036; BAB98057.1; -; Genomic_DNA.
DR   EMBL; BX927149; CAF19369.1; -; Genomic_DNA.
DR   PIR; I40719; I40719.
DR   RefSeq; NP_599896.1; NC_003450.3.
DR   RefSeq; WP_011013800.1; NC_006958.1.
DR   PDB; 2B0T; X-ray; 1.75 A; A=1-738.
DR   PDB; 3MBC; X-ray; 1.90 A; A/B=1-738.
DR   PDBsum; 2B0T; -.
DR   PDBsum; 3MBC; -.
DR   AlphaFoldDB; P50216; -.
DR   SMR; P50216; -.
DR   STRING; 196627.cg0766; -.
DR   PRIDE; P50216; -.
DR   KEGG; cgb:cg0766; -.
DR   KEGG; cgl:Cgl0664; -.
DR   PATRIC; fig|196627.13.peg.650; -.
DR   eggNOG; COG2838; Bacteria.
DR   HOGENOM; CLU_025308_1_0_11; -.
DR   OMA; FRMCQTK; -.
DR   BRENDA; 1.1.1.42; 960.
DR   EvolutionaryTrace; P50216; -.
DR   Proteomes; UP000000582; Chromosome.
DR   GO; GO:0004450; F:isocitrate dehydrogenase (NADP+) activity; IEA:UniProtKB-EC.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006097; P:glyoxylate cycle; IEA:UniProtKB-KW.
DR   GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-KW.
DR   InterPro; IPR004436; Isocitrate_DH_NADP_mono.
DR   PANTHER; PTHR36999; PTHR36999; 1.
DR   Pfam; PF03971; IDH; 1.
DR   PIRSF; PIRSF009407; IDH_monmr; 1.
DR   TIGRFAMs; TIGR00178; monomer_idh; 1.
PE   1: Evidence at protein level;
KW   3D-structure; Glyoxylate bypass; Magnesium; Manganese; Metal-binding; NADP;
KW   Oxidoreductase; Phosphoprotein; Reference proteome;
KW   Tricarboxylic acid cycle.
FT   CHAIN           1..738
FT                   /note="Isocitrate dehydrogenase [NADP]"
FT                   /id="PRO_0000083595"
FT   BINDING         80..85
FT                   /ligand="NADP(+)"
FT                   /ligand_id="ChEBI:CHEBI:58349"
FT                   /evidence="ECO:0000250"
FT   BINDING         130..137
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250"
FT   BINDING         133
FT                   /ligand="NADP(+)"
FT                   /ligand_id="ChEBI:CHEBI:58349"
FT                   /evidence="ECO:0000250"
FT   BINDING         143
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250"
FT   BINDING         346
FT                   /ligand="Mn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29035"
FT                   /evidence="ECO:0000269|PubMed:16416443"
FT   BINDING         543
FT                   /ligand="substrate"
FT                   /evidence="ECO:0000250"
FT   BINDING         544
FT                   /ligand="Mn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29035"
FT                   /evidence="ECO:0000269|PubMed:16416443"
FT   BINDING         548
FT                   /ligand="Mn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29035"
FT                   /evidence="ECO:0000269|PubMed:16416443"
FT   BINDING         580..581
FT                   /ligand="NADP(+)"
FT                   /ligand_id="ChEBI:CHEBI:58349"
FT                   /evidence="ECO:0000250"
FT   BINDING         585
FT                   /ligand="NADP(+)"
FT                   /ligand_id="ChEBI:CHEBI:58349"
FT                   /evidence="ECO:0000250"
FT   BINDING         596..598
FT                   /ligand="NADP(+)"
FT                   /ligand_id="ChEBI:CHEBI:58349"
FT                   /evidence="ECO:0000250"
FT   BINDING         645
FT                   /ligand="NADP(+)"
FT                   /ligand_id="ChEBI:CHEBI:58349"
FT                   /evidence="ECO:0000250"
FT   SITE            253
FT                   /note="Critical for catalysis"
FT                   /evidence="ECO:0000250"
FT   SITE            416
FT                   /note="Critical for catalysis"
FT                   /evidence="ECO:0000250"
FT   STRAND          3..8
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           11..29
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   TURN            30..32
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          34..39
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           42..47
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           51..53
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   TURN            56..58
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           63..70
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          77..80
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           88..100
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           115..125
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          128..130
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           132..136
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          141..144
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           147..155
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          170..172
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          175..178
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           179..182
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          184..187
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          192..199
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          205..214
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          219..225
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           227..244
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          247..250
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   TURN            254..256
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           260..272
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           274..286
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           294..302
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           308..321
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          327..329
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           330..332
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          342..344
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           345..354
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   TURN            355..357
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          358..360
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          366..372
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           376..392
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   TURN            397..399
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          405..407
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   TURN            410..412
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           414..417
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           419..421
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          422..424
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          427..434
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          440..446
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          451..457
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           459..476
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          480..483
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           489..502
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          512..515
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           517..529
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          535..538
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           540..555
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          558..560
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          562..567
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          572..575
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           583..592
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           600..617
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           620..638
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           652..669
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           674..700
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   STRAND          711..713
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           716..723
FT                   /evidence="ECO:0007829|PDB:2B0T"
FT   HELIX           727..735
FT                   /evidence="ECO:0007829|PDB:2B0T"
SQ   SEQUENCE   738 AA;  80081 MW;  EAC4C5FA38C33F63 CRC64;
     MAKIIWTRTD EAPLLATYSL KPVVEAFAAT AGIEVETRDI SLAGRILAQF PERLTEDQKV
     GNALAELGEL AKTPEANIIK LPNISASVPQ LKAAIKELQD QGYDIPELPD NATTDEEKDI
     LARYNAVKGS AVNPVLREGN SDRRAPIAVK NFVKKFPHRM GEWSADSKTN VATMDANDFR
     HNEKSIILDA ADEVQIKHIA ADGTETILKD SLKLLEGEVL DGTVLSAKAL DAFLLEQVAR
     AKAEGILFSA HLKATMMKVS DPIIFGHVVR AYFADVFAQY GEQLLAAGLN GENGLAAILS
     GLESLDNGEE IKAAFEKGLE DGPDLAMVNS ARGITNLHVP SDVIVDASMP AMIRTSGHMW
     NKDDQEQDTL AIIPDSSYAG VYQTVIEDCR KNGAFDPTTM GTVPNVGLMA QKAEEYGSHD
     KTFRIEADGV VQVVSSNGDV LIEHDVEAND IWRACQVKDA PIQDWVKLAV TRSRLSGMPA
     VFWLDPERAH DRNLASLVEK YLADHDTEGL DIQILSPVEA TQLSIDRIRR GEDTISVTGN
     VLRDYNTDLF PILELGTSAK MLSVVPLMAG GGLFETGAGG SAPKHVQQVQ EENHLRWDSL
     GEFLALAESF RHELNNNGNT KAGVLADALD KATEKLLNEE KSPSRKVGEI DNRGSHFWLT
     KFWADELAAQ TEDADLAATF APVAEALNTG AADIDAALLA VQGGATDLGG YYSPNEEKLT
     NIMRPVAQFN EIVDALKK
 
 
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