IDL5_ARATH
ID IDL5_ARATH Reviewed; 111 AA.
AC Q6DUW8;
DT 22-SEP-2009, integrated into UniProtKB/Swiss-Prot.
DT 31-MAY-2011, sequence version 2.
DT 25-MAY-2022, entry version 78.
DE RecName: Full=Protein IDA-LIKE 5;
DE Flags: Precursor;
GN Name=IDL5; OrderedLocusNames=At1g76952; ORFNames=F22K20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND TISSUE SPECIFICITY.
RX PubMed=12972671; DOI=10.1105/tpc.014365;
RA Butenko M.A., Patterson S.E., Grini P.E., Stenvik G.-E., Amundsen S.S.,
RA Mandal A., Aalen R.B.;
RT "Inflorescence deficient in abscission controls floral organ abscission in
RT Arabidopsis and identifies a novel family of putative ligands in plants.";
RL Plant Cell 15:2296-2307(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=16244158; DOI=10.1104/pp.105.063479;
RA Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L.,
RA Ayele M., Haas B.J., Wu H.C., Town C.D.;
RT "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2
RT reveals numerous transcript variants.";
RL Plant Physiol. 139:1323-1337(2005).
RN [5]
RP FUNCTION, AND TISSUE SPECIFICITY.
RX PubMed=18660431; DOI=10.1105/tpc.108.059139;
RA Stenvik G.-E., Tandstad N.M., Guo Y., Shi C.-L., Kristiansen W.,
RA Holmgren A., Clark S.E., Aalen R.B., Butenko M.A.;
RT "The EPIP peptide of INFLORESCENCE DEFICIENT IN ABSCISSION is sufficient to
RT induce abscission in arabidopsis through the receptor-like kinases HAESA
RT and HAESA-LIKE2.";
RL Plant Cell 20:1805-1817(2008).
CC -!- FUNCTION: May be involved in floral abscission.
CC {ECO:0000269|PubMed:18660431}.
CC -!- SUBCELLULAR LOCATION: Secreted, extracellular space {ECO:0000250}.
CC -!- TISSUE SPECIFICITY: Expressed mainly in flowers. Lower levels in buds
CC and seedlings. Detected in vascular tissues and in hydathodes.
CC {ECO:0000269|PubMed:12972671, ECO:0000269|PubMed:18660431}.
CC -!- MISCELLANEOUS: IDL5 is only partially redundant with IDA.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAT66016.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY642386; AAT66016.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC002291; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002684; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; EG521009; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; EG521010; -; NOT_ANNOTATED_CDS; mRNA.
DR AlphaFoldDB; Q6DUW8; -.
DR STRING; 3702.AT1G76952.1; -.
DR PaxDb; Q6DUW8; -.
DR Araport; AT1G76952; -.
DR TAIR; locus:4010713599; AT1G76952.
DR HOGENOM; CLU_2281414_0_0_1; -.
DR InParanoid; Q6DUW8; -.
DR PRO; PR:Q6DUW8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q6DUW8; baseline and differential.
DR GO; GO:0005615; C:extracellular space; IEA:UniProtKB-SubCell.
DR GO; GO:0010227; P:floral organ abscission; IMP:TAIR.
DR InterPro; IPR039639; IDA-like.
DR PANTHER; PTHR33599; PTHR33599; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Secreted; Signal.
FT SIGNAL 1..27
FT /evidence="ECO:0000255"
FT CHAIN 28..111
FT /note="Protein IDA-LIKE 5"
FT /id="PRO_0000383593"
FT REGION 46..65
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 83
FT /note="S -> F (in Ref. 4; EG521009/EG521010)"
FT /evidence="ECO:0000305"
FT CONFLICT 111
FT /note="S -> F (in Ref. 4; EG521010)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 111 AA; 13060 MW; 6A5F4B55F8B9E2A5 CRC64;
MGNKRIKAMM ILVVMIMMVF SWRICEADSL RRYSSSSRPQ RFFKVRRPNP RNHHHQNQGF
NGDDYPPESF SGFLPKTLPI PHSAPSRKHN VYGLQRTNSR SSYFWTHAHL S
