IF2C_RHDSA
ID IF2C_RHDSA Reviewed; 751 AA.
AC A6MVX8;
DT 20-MAY-2008, integrated into UniProtKB/Swiss-Prot.
DT 24-JUL-2007, sequence version 1.
DT 03-AUG-2022, entry version 67.
DE RecName: Full=Translation initiation factor IF-2, chloroplastic;
GN Name=infB;
OS Rhodomonas salina (Cryptomonas salina).
OG Plastid; Chloroplast.
OC Eukaryota; Cryptophyceae; Pyrenomonadales; Pyrenomonadaceae; Rhodomonas.
OX NCBI_TaxID=52970;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1319 / NEPCC76 / CS-174;
RX PubMed=17522086; DOI=10.1093/molbev/msm101;
RA Khan H., Parks N., Kozera C., Curtis B.A., Parsons B.J., Bowman S.,
RA Archibald J.M.;
RT "Plastid genome sequence of the cryptophyte alga Rhodomonas salina
RT CCMP1319: lateral transfer of putative DNA replication machinery and a test
RT of chromist plastid phylogeny.";
RL Mol. Biol. Evol. 24:1832-1842(2007).
CC -!- FUNCTION: One of the essential components for the initiation of protein
CC synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis
CC and promotes its binding to the 30S ribosomal subunits. Also involved
CC in the hydrolysis of GTP during the formation of the 70S ribosomal
CC complex (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast.
CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase
CC superfamily. Classic translation factor GTPase family. IF-2 subfamily.
CC {ECO:0000305}.
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DR EMBL; EF508371; ABO70809.1; -; Genomic_DNA.
DR RefSeq; YP_001293557.1; NC_009573.1.
DR AlphaFoldDB; A6MVX8; -.
DR SMR; A6MVX8; -.
DR GeneID; 5228605; -.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-UniRule.
DR CDD; cd03702; IF2_mtIF2_II; 1.
DR Gene3D; 3.40.50.10050; -; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR HAMAP; MF_00100_B; IF_2_B; 1.
DR InterPro; IPR044145; IF2_II.
DR InterPro; IPR006847; IF2_N.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR005225; Small_GTP-bd_dom.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR000178; TF_IF2_bacterial-like.
DR InterPro; IPR015760; TIF_IF2.
DR InterPro; IPR023115; TIF_IF2_dom3.
DR InterPro; IPR036925; TIF_IF2_dom3_sf.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR PANTHER; PTHR43381; PTHR43381; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF11987; IF-2; 1.
DR Pfam; PF04760; IF2_N; 1.
DR PRINTS; PR00315; ELONGATNFCT.
DR SUPFAM; SSF50447; SSF50447; 2.
DR SUPFAM; SSF52156; SSF52156; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR TIGRFAMs; TIGR00487; IF-2; 1.
DR TIGRFAMs; TIGR00231; small_GTP; 1.
DR PROSITE; PS51722; G_TR_2; 1.
PE 3: Inferred from homology;
KW Chloroplast; GTP-binding; Initiation factor; Nucleotide-binding; Plastid;
KW Protein biosynthesis.
FT CHAIN 1..751
FT /note="Translation initiation factor IF-2, chloroplastic"
FT /id="PRO_0000335538"
FT DOMAIN 250..423
FT /note="tr-type G"
FT REGION 86..156
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 259..266
FT /note="G1"
FT /evidence="ECO:0000250"
FT REGION 284..288
FT /note="G2"
FT /evidence="ECO:0000250"
FT REGION 309..312
FT /note="G3"
FT /evidence="ECO:0000250"
FT REGION 363..366
FT /note="G4"
FT /evidence="ECO:0000250"
FT REGION 399..401
FT /note="G5"
FT /evidence="ECO:0000250"
FT COMPBIAS 86..104
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 127..141
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 259..266
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
FT BINDING 309..313
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
FT BINDING 363..366
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000250"
SQ SEQUENCE 751 AA; 83013 MW; F9F663D70CC71E02 CRC64;
MNNNIAISKE NTIKLSFPLV FDTKTTNTST KEYVETIKED EKVDLFDPTI DTKLFVKPDR
KTKKNDKSDQ RDSDIDIIKT KLKSKKKEKS KFRKDEDYDS LKREDNQSPQ GAMSSLPFAR
PEVPAKKMVS NTNTLNKKNV VKSSTKKSKK QTSAKNRELE QNLLVKPENV VIAGPLSVQE
LAVLLTVSET EIIRSLFLKG IGVTINQILD VSTAKTVGED LGINIDHVKD SDEESKKLQI
HEIDNESLEK RPPVIAIMGH VDHGKTTLLD KIRKTQIAQK EAGGITQKIG AYEVEIDYKD
QTKKLTFLDT PGHEAFSGMR SRGVQVTDIA ILVVAADDGV KPQTVEAIKY IQAANVPIIV
AINKIDKENA DIENIKQQLT QYNLIPENWG GDTLMVPISA MKGTNMENLL EMIILVSEIE
DLKANTKVKA QGTVLEAHLD RTKGAVATLL VQNGTLRIGD ILTAGTSMAK IRGMINSLGE
KIEECLPSSP VLIWGLSKLP ASGEHFEIFD DEKQAKIAVQ KAQEANKENQ TIANTISENY
TLSNSNTKGV INLIIKTDIQ GSAEAIIGSI NKIPQDKVQV RVLYASAGEI TETDIDFADT
SGAIVLAFNT SLATGASKAA RHLNVKVKEY DVIYDLLDYI ELTIEEITGP EYDKKSLGKA
IVQGVFPLAK SFVAGLRVTE GKITKNAHIE VIRQDLVVFD GSITSLKKVK EDIGEAIEDS
ECGLFVEEFD TWQENDIVQA FELIPKKRKE K