IF2_DEIGD
ID IF2_DEIGD Reviewed; 601 AA.
AC Q1IZ02;
DT 15-JAN-2008, integrated into UniProtKB/Swiss-Prot.
DT 13-JUN-2006, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100};
GN Name=infB {ECO:0000255|HAMAP-Rule:MF_00100}; OrderedLocusNames=Dgeo_1236;
OS Deinococcus geothermalis (strain DSM 11300 / AG-3a).
OC Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae;
OC Deinococcus.
OX NCBI_TaxID=319795;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 11300 / AG-3a;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Brettin T., Bruce D., Han C., Tapia R., Saunders E., Gilna P., Schmutz J.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Daly M.J.,
RA Fredrickson J.K., Makarova K.S., Gaidamakova E.K., Zhai M., Richardson P.;
RT "Complete sequence of chromosome 1 of Deinococcus geothermalis DSM 11300.";
RL Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: One of the essential components for the initiation of protein
CC synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis
CC and promotes its binding to the 30S ribosomal subunits. Also involved
CC in the hydrolysis of GTP during the formation of the 70S ribosomal
CC complex. {ECO:0000255|HAMAP-Rule:MF_00100}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00100}.
CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase
CC superfamily. Classic translation factor GTPase family. IF-2 subfamily.
CC {ECO:0000255|HAMAP-Rule:MF_00100}.
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DR EMBL; CP000359; ABF45532.1; -; Genomic_DNA.
DR RefSeq; WP_011530369.1; NC_008025.1.
DR AlphaFoldDB; Q1IZ02; -.
DR SMR; Q1IZ02; -.
DR STRING; 319795.Dgeo_1236; -.
DR EnsemblBacteria; ABF45532; ABF45532; Dgeo_1236.
DR KEGG; dge:Dgeo_1236; -.
DR eggNOG; COG0532; Bacteria.
DR HOGENOM; CLU_006301_5_2_0; -.
DR OMA; NRDNRTG; -.
DR OrthoDB; 347113at2; -.
DR Proteomes; UP000002431; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-UniRule.
DR CDD; cd03702; IF2_mtIF2_II; 1.
DR Gene3D; 3.40.50.10050; -; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR HAMAP; MF_00100_B; IF_2_B; 1.
DR InterPro; IPR044145; IF2_II.
DR InterPro; IPR006847; IF2_N.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR005225; Small_GTP-bd_dom.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR000178; TF_IF2_bacterial-like.
DR InterPro; IPR015760; TIF_IF2.
DR InterPro; IPR023115; TIF_IF2_dom3.
DR InterPro; IPR036925; TIF_IF2_dom3_sf.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR PANTHER; PTHR43381; PTHR43381; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF11987; IF-2; 1.
DR Pfam; PF04760; IF2_N; 1.
DR SUPFAM; SSF50447; SSF50447; 2.
DR SUPFAM; SSF52156; SSF52156; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR TIGRFAMs; TIGR00487; IF-2; 1.
DR TIGRFAMs; TIGR00231; small_GTP; 1.
DR PROSITE; PS51722; G_TR_2; 1.
DR PROSITE; PS01176; IF2; 1.
PE 3: Inferred from homology;
KW Cytoplasm; GTP-binding; Initiation factor; Nucleotide-binding;
KW Protein biosynthesis; Reference proteome.
FT CHAIN 1..601
FT /note="Translation initiation factor IF-2"
FT /id="PRO_1000008236"
FT DOMAIN 104..273
FT /note="tr-type G"
FT REGION 54..101
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 113..120
FT /note="G1"
FT /evidence="ECO:0000250"
FT REGION 138..142
FT /note="G2"
FT /evidence="ECO:0000250"
FT REGION 159..162
FT /note="G3"
FT /evidence="ECO:0000250"
FT REGION 213..216
FT /note="G4"
FT /evidence="ECO:0000250"
FT REGION 249..251
FT /note="G5"
FT /evidence="ECO:0000250"
FT COMPBIAS 62..86
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 113..120
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00100"
FT BINDING 159..163
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00100"
FT BINDING 213..216
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00100"
SQ SEQUENCE 601 AA; 64583 MW; F5925523467F0E26 CRC64;
MSKVRIYTLA KDLGVDNAKM LEILDGLGVA YKSVSSTIEE DTVELIKQIL EEEGHTASAE
PAPAQASGSP ASPAQTEAQE APQPTATATA EREPAAPPAR ELPHRAPVVT IMGHVDHGKT
SLLDYIRKTK VAAKEAGGIT QHVGAFEAKT SKGKIVFIDT PGHEAFTTIR ARGANVADIA
VIVIAADDSL MPQTREAIAH AQAAKVPMIV AINKVDLPQA DPEKVKTDLT QLNLVPEEYG
GDLIVVPVSA KTGEGVEDLL EYISLTAELE DLRADPQGEF SGVIIESRVD RQAGVLATVM
VQEGTLHVGD FLVVGENYGK VKAMTDSNGG RIKEAGPSTP VQVLGFSEAP SSGEKVVSVK
NEHAARELVA QRVETRREAE NARVQRKKTL EEMMGPLGET RTVNLILRAD TQGSLEAIQG
ILARKETEDV KLNVMLAGIG SPTEGDVLLA STADATILCF NVTASGSVKK AAEQRDIELK
SFRIIYELID EVDRLIKGNV EPVFEERPLG RAEVRMVIRH PKSGNIAGSY VTDGLLRRNA
KARVLRGKQV VYEGTIVGLK RFKDDVREVQ AGYECGVNLD WNDVQEGDII EASELVEVAQ
A