APEP3_ORYSJ
ID APEP3_ORYSJ Reviewed; 63 AA.
AC A9UGV7;
DT 05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
DT 24-MAR-2009, sequence version 1.
DT 25-MAY-2022, entry version 24.
DE RecName: Full=Arabinogalactan peptide 3;
DE Short=OsAGPEP3;
DE Flags: Precursor;
GN Name=AGPEP3; OrderedLocusNames=Os05g0541750; ORFNames=OsJ_19396;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 27-36, TISSUE
RP SPECIFICITY, AND GLYCOSYLATION.
RC STRAIN=cv. Koshihikari; TISSUE=Aleurone;
RX PubMed=15653800; DOI=10.1093/pcp/pch208;
RA Mashiguchi K., Yamaguchi I., Suzuki Y.;
RT "Isolation and identification of glycosylphosphatidylinositol-anchored
RT arabinogalactan proteins and novel beta-glucosyl Yariv-reactive proteins
RT from seeds of rice (Oryza sativa).";
RL Plant Cell Physiol. 45:1817-1829(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Proteoglycan that seems to be implicated in diverse
CC developmental roles such as differentiation, cell-cell recognition,
CC embryogenesis and programmed cell death. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Vacuole, aleurone grain membrane {ECO:0000305};
CC Lipid-anchor, GPI-anchor {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and
CC seeds. {ECO:0000269|PubMed:15653800}.
CC -!- PTM: O-glycosylated on hydroxyprolines; noncontiguous hydroxylproline
CC residues are glycosylated with arabinogalactan.
CC {ECO:0000269|PubMed:15653800}.
CC -!- SIMILARITY: Belongs to the AG-peptide AGP family. {ECO:0000305}.
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DR EMBL; EU282464; ABX83036.1; -; Genomic_DNA.
DR EMBL; AP008211; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP014961; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM000142; EEE64544.1; -; Genomic_DNA.
DR EMBL; AK243547; -; NOT_ANNOTATED_CDS; mRNA.
DR AlphaFoldDB; A9UGV7; -.
DR STRING; 4530.OS05T0541750-01; -.
DR eggNOG; ENOG502SZH2; Eukaryota.
DR HOGENOM; CLU_191899_0_0_1; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000007752; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR GO; GO:0032578; C:aleurone grain membrane; IDA:UniProtKB.
DR GO; GO:0031225; C:anchored component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005773; C:vacuole; IEA:UniProtKB-KW.
DR InterPro; IPR039281; AGP3/12/13/14/21.
DR PANTHER; PTHR34114; PTHR34114; 1.
PE 1: Evidence at protein level;
KW Direct protein sequencing; Glycoprotein; GPI-anchor; Hydroxylation;
KW Lipoprotein; Membrane; Proteoglycan; Reference proteome; Signal; Vacuole.
FT SIGNAL 1..26
FT /evidence="ECO:0000269|PubMed:15653800"
FT CHAIN 27..36
FT /note="Arabinogalactan peptide 3"
FT /id="PRO_0000397894"
FT PROPEP 37..63
FT /note="Removed in mature form"
FT /evidence="ECO:0000255"
FT /id="PRO_0000397895"
FT LIPID 36
FT /note="GPI-anchor amidated serine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 63 AA; 5938 MW; D46D6201561E34AA CRC64;
MASRILYAAA VVAAVAVSSL AGVAYAADAP APSPTSGAAA VSSSLVAAVL CPAVALLLGN
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