IF2_XANAC
ID IF2_XANAC Reviewed; 904 AA.
AC Q8PJ55;
DT 10-OCT-2002, integrated into UniProtKB/Swiss-Prot.
DT 10-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=Translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100};
GN Name=infB {ECO:0000255|HAMAP-Rule:MF_00100}; OrderedLocusNames=XAC2687;
OS Xanthomonas axonopodis pv. citri (strain 306).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
OC Xanthomonadaceae; Xanthomonas.
OX NCBI_TaxID=190486;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=306;
RX PubMed=12024217; DOI=10.1038/417459a;
RA da Silva A.C.R., Ferro J.A., Reinach F.C., Farah C.S., Furlan L.R.,
RA Quaggio R.B., Monteiro-Vitorello C.B., Van Sluys M.A., Almeida N.F. Jr.,
RA Alves L.M.C., do Amaral A.M., Bertolini M.C., Camargo L.E.A., Camarotte G.,
RA Cannavan F., Cardozo J., Chambergo F., Ciapina L.P., Cicarelli R.M.B.,
RA Coutinho L.L., Cursino-Santos J.R., El-Dorry H., Faria J.B.,
RA Ferreira A.J.S., Ferreira R.C.C., Ferro M.I.T., Formighieri E.F.,
RA Franco M.C., Greggio C.C., Gruber A., Katsuyama A.M., Kishi L.T.,
RA Leite R.P., Lemos E.G.M., Lemos M.V.F., Locali E.C., Machado M.A.,
RA Madeira A.M.B.N., Martinez-Rossi N.M., Martins E.C., Meidanis J.,
RA Menck C.F.M., Miyaki C.Y., Moon D.H., Moreira L.M., Novo M.T.M.,
RA Okura V.K., Oliveira M.C., Oliveira V.R., Pereira H.A., Rossi A.,
RA Sena J.A.D., Silva C., de Souza R.F., Spinola L.A.F., Takita M.A.,
RA Tamura R.E., Teixeira E.C., Tezza R.I.D., Trindade dos Santos M.,
RA Truffi D., Tsai S.M., White F.F., Setubal J.C., Kitajima J.P.;
RT "Comparison of the genomes of two Xanthomonas pathogens with differing host
RT specificities.";
RL Nature 417:459-463(2002).
CC -!- FUNCTION: One of the essential components for the initiation of protein
CC synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis
CC and promotes its binding to the 30S ribosomal subunits. Also involved
CC in the hydrolysis of GTP during the formation of the 70S ribosomal
CC complex. {ECO:0000255|HAMAP-Rule:MF_00100}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00100}.
CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase
CC superfamily. Classic translation factor GTPase family. IF-2 subfamily.
CC {ECO:0000255|HAMAP-Rule:MF_00100}.
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DR EMBL; AE008923; AAM37534.1; -; Genomic_DNA.
DR RefSeq; WP_011051766.1; NC_003919.1.
DR AlphaFoldDB; Q8PJ55; -.
DR SMR; Q8PJ55; -.
DR STRING; 190486.XAC2687; -.
DR PRIDE; Q8PJ55; -.
DR EnsemblBacteria; AAM37534; AAM37534; XAC2687.
DR GeneID; 66911776; -.
DR KEGG; xac:XAC2687; -.
DR eggNOG; COG0532; Bacteria.
DR HOGENOM; CLU_006301_6_3_6; -.
DR OMA; NRDNRTG; -.
DR Proteomes; UP000000576; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-UniRule.
DR CDD; cd03702; IF2_mtIF2_II; 1.
DR Gene3D; 3.40.50.10050; -; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR HAMAP; MF_00100_B; IF_2_B; 1.
DR InterPro; IPR009061; DNA-bd_dom_put_sf.
DR InterPro; IPR013575; IF2_assoc_dom_bac.
DR InterPro; IPR044145; IF2_II.
DR InterPro; IPR006847; IF2_N.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR005225; Small_GTP-bd_dom.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR000178; TF_IF2_bacterial-like.
DR InterPro; IPR015760; TIF_IF2.
DR InterPro; IPR023115; TIF_IF2_dom3.
DR InterPro; IPR036925; TIF_IF2_dom3_sf.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR PANTHER; PTHR43381; PTHR43381; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF11987; IF-2; 1.
DR Pfam; PF08364; IF2_assoc; 1.
DR Pfam; PF04760; IF2_N; 1.
DR SUPFAM; SSF46955; SSF46955; 1.
DR SUPFAM; SSF50447; SSF50447; 2.
DR SUPFAM; SSF52156; SSF52156; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR TIGRFAMs; TIGR00487; IF-2; 1.
DR TIGRFAMs; TIGR00231; small_GTP; 1.
DR PROSITE; PS51722; G_TR_2; 1.
DR PROSITE; PS01176; IF2; 1.
PE 3: Inferred from homology;
KW Cytoplasm; GTP-binding; Initiation factor; Nucleotide-binding;
KW Protein biosynthesis.
FT CHAIN 1..904
FT /note="Translation initiation factor IF-2"
FT /id="PRO_0000137285"
FT DOMAIN 403..572
FT /note="tr-type G"
FT REGION 102..122
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 134..252
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 267..316
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 412..419
FT /note="G1"
FT /evidence="ECO:0000250"
FT REGION 437..441
FT /note="G2"
FT /evidence="ECO:0000250"
FT REGION 458..461
FT /note="G3"
FT /evidence="ECO:0000250"
FT REGION 512..515
FT /note="G4"
FT /evidence="ECO:0000250"
FT REGION 548..550
FT /note="G5"
FT /evidence="ECO:0000250"
FT COMPBIAS 134..177
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 234..252
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 283..305
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 412..419
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00100"
FT BINDING 458..462
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00100"
FT BINDING 512..515
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00100"
SQ SEQUENCE 904 AA; 96181 MW; BB292B856F63B3BE CRC64;
MSQQTTIRKL AELVNTPVDK LLVQLAEAGM KFSGPDQVVT STEKMKLLGF LRRTHGKAET
SAEAASEAAK KITLNRRKLQ EVTVNAGRTK TTVNVEVRQK RTYVKSENEG GGRAAPMTPD
EERADILRKL EESRQRNLEE QQRLAESDRV RDEAIQRKRE EEQAAKDRAE AERKAAEEAA
AAASAPAPVA DAPKPSAAAP AARLPSSPSS APRAARPAGA SPASRPAAPA RADDRSNAAK
HKTRGSHVMV AGVEDDDATK RFAGQLHLSA ADRARRSNVR GKPTGRPGSS SSRRGNDSGR
GGSQANSGPH GFERPTAPVV REVAIGETIT VADLAQKLAL KGGDVVKALF KMGVMATITQ
SIDHDTAALV TEELGHKAVR ADNADFEDAL LAHAEDAQGE ATSRPPVVTI MGHVDHGKTS
LLDYIRRTKI ASGEAGGITQ HIGAYHVETG RGVISFLDTP GHAAFTSMRA RGAKITDIVV
LVVAADDGVM PQTKEAVAHA KAAGVPLIVA VNKIDKTGAD PLRVKNELLA ENVVAEEFGG
DTQFIEVSAK LGTGVDTLLD AISLQAEVLE LKAVAEGRAS GTVIESSLDK GRGPVATVLV
QQGALKRGDY LVCGIQYGRV RALFDETGHQ PASAGPSIPV QVLGLSGVPE AGDDFVVVDD
ERLAKDVAQQ RETKRRESRL VASATNRMED ILAQMGKGEG QQVLNLVIKA DVQGSVEALK
QSLVALSNED IRINVIHSGV GGITESDANS AAASKATIIG FNVRADASAR KIVESNGIDL
RYFSIIYDVI DQVKQVASGL LGVEIREEII GIAQVRDVFR SSKFGAVAGC MVIEGVVKRS
KPIRVLRDSV VVFEGELESL RRFKENVDEV RNGTECGIGV KAYNDVKAGD QIECFERIEV
ARTL