IF2_XYLF2
ID IF2_XYLF2 Reviewed; 892 AA.
AC B2I726;
DT 24-MAR-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-JUN-2008, sequence version 1.
DT 03-AUG-2022, entry version 79.
DE RecName: Full=Translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100};
GN Name=infB {ECO:0000255|HAMAP-Rule:MF_00100};
GN OrderedLocusNames=XfasM23_0179;
OS Xylella fastidiosa (strain M23).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
OC Xanthomonadaceae; Xylella.
OX NCBI_TaxID=405441;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=M23;
RX PubMed=20601474; DOI=10.1128/jb.00651-10;
RA Chen J., Xie G., Han S., Chertkov O., Sims D., Civerolo E.L.;
RT "Whole genome sequences of two Xylella fastidiosa strains (M12 and M23)
RT causing almond leaf scorch disease in California.";
RL J. Bacteriol. 192:4534-4534(2010).
CC -!- FUNCTION: One of the essential components for the initiation of protein
CC synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis
CC and promotes its binding to the 30S ribosomal subunits. Also involved
CC in the hydrolysis of GTP during the formation of the 70S ribosomal
CC complex. {ECO:0000255|HAMAP-Rule:MF_00100}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00100}.
CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase
CC superfamily. Classic translation factor GTPase family. IF-2 subfamily.
CC {ECO:0000255|HAMAP-Rule:MF_00100}.
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DR EMBL; CP001011; ACB91636.1; -; Genomic_DNA.
DR RefSeq; WP_004572952.1; NC_010577.1.
DR AlphaFoldDB; B2I726; -.
DR SMR; B2I726; -.
DR PRIDE; B2I726; -.
DR EnsemblBacteria; ACB91636; ACB91636; XfasM23_0179.
DR GeneID; 58015750; -.
DR KEGG; xfn:XfasM23_0179; -.
DR HOGENOM; CLU_006301_6_1_6; -.
DR OMA; NRDNRTG; -.
DR Proteomes; UP000001698; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0003924; F:GTPase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-UniRule.
DR CDD; cd03702; IF2_mtIF2_II; 1.
DR Gene3D; 3.40.50.10050; -; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR HAMAP; MF_00100_B; IF_2_B; 1.
DR InterPro; IPR009061; DNA-bd_dom_put_sf.
DR InterPro; IPR013575; IF2_assoc_dom_bac.
DR InterPro; IPR044145; IF2_II.
DR InterPro; IPR006847; IF2_N.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR005225; Small_GTP-bd_dom.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR000178; TF_IF2_bacterial-like.
DR InterPro; IPR015760; TIF_IF2.
DR InterPro; IPR023115; TIF_IF2_dom3.
DR InterPro; IPR036925; TIF_IF2_dom3_sf.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR PANTHER; PTHR43381; PTHR43381; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF11987; IF-2; 1.
DR Pfam; PF08364; IF2_assoc; 1.
DR Pfam; PF04760; IF2_N; 1.
DR SUPFAM; SSF46955; SSF46955; 1.
DR SUPFAM; SSF50447; SSF50447; 2.
DR SUPFAM; SSF52156; SSF52156; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR TIGRFAMs; TIGR00487; IF-2; 1.
DR TIGRFAMs; TIGR00231; small_GTP; 1.
DR PROSITE; PS51722; G_TR_2; 1.
DR PROSITE; PS01176; IF2; 1.
PE 3: Inferred from homology;
KW Cytoplasm; GTP-binding; Initiation factor; Nucleotide-binding;
KW Protein biosynthesis.
FT CHAIN 1..892
FT /note="Translation initiation factor IF-2"
FT /id="PRO_1000093845"
FT DOMAIN 391..560
FT /note="tr-type G"
FT REGION 138..250
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 262..298
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 138..183
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 228..250
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 275..297
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 400..407
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00100"
FT BINDING 446..450
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00100"
FT BINDING 500..503
FT /ligand="GTP"
FT /ligand_id="ChEBI:CHEBI:37565"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00100"
SQ SEQUENCE 892 AA; 97277 MW; 203CF462EC02A8E1 CRC64;
MSQQTTIRKL AELVNTPVEK LLEQLAGAGM KFSGPDQVVT STEKMKLLGF LRRTHGKSDV
SVGTVREAPK KITLNRRRLQ EVTVNAGRNK TTVNVEVRQK RTYVKPPESE YHTPTKPPIE
LADAERVEIL RKLEESRQRN LAEQQRLAEV DRQRVEEQER KRREEEQAEL ERQKTESRVV
EEILVKTDSN SVKPVSKPIS EERTRALPRT VRPTPAARPS VSRSDDRNSN GGVRHKARGS
HVIVSDEDDS ARRFAGQMHL TAAERARRGS NTRGKGGGSH RSATHRGNEN SIRSSGAHGF
ERPTVAVVRE VAVGDTITVA DLAQKLALKS GDMVKALFKM GVMVTITQTI DHDTAVLVSE
ELGHKVTRAS SSDFEDALLA HTEELHGEPV PRPPVVTIMG HVDHGKTSLL DYIRRTKIAV
GEAGGITQHI GAYHVETPRG VISFLDTPGH AAFTSMRARG AKITDIVVLV VAADDGVMPQ
TKEAVQHARA AGVPLIVAVS KIDKSTADPQ RVKNELLTES VVAEEFGGDT QFVELSAKTG
VGVDALLDAI SIQAEVLELK AVIEGRATGT VIESSLDKGR GPVATVLVQQ GRLKKGDYLV
CGTHYGRVRA LFDEVGHQPL AASPSIPVQV LGLSGVPDAG DDFVVVDDER LAKDVAQQRE
AKRRESRLVT SAGNRMEDIL AQMGKGENQQ VLNLLIKADV QGSLEALKQA LVALSNDDIR
INVIHVGVGG ITESDANSAV TSKATVIGFN VRADASARKI IEVNGVDLRY FSIIYDVIDQ
VKQVASGLLG VEIREEIIGV AEVRDVFRSS KFGAVAGCMI IEGVVKRSKP IRVLRDNTVV
FEGELESLRR FKENVDEVRN SIECGIGVKA YNDVRVGDSI ECFERIEVAR TL
