IF4G2_ORYSJ
ID IF4G2_ORYSJ Reviewed; 780 AA.
AC Q6K641; A0A0P0VLJ5;
DT 09-JAN-2013, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Eukaryotic translation initiation factor isoform 4G-2;
DE Short=eIF(iso)-4G-2;
DE Short=eIF(iso)4G-2;
DE AltName: Full=Eukaryotic initiation factor iso-4F subunit p82;
DE Short=eIF-(iso)4F p82 subunit;
GN OrderedLocusNames=Os02g0611500, LOC_Os02g39840;
GN ORFNames=OJ1004_A05.11, OsJ_07496;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP GENE FAMILY.
RX PubMed=17898986; DOI=10.1007/s00122-007-0646-6;
RA Boisnard A., Albar L., Thiemele D., Rondeau M., Ghesquiere A.;
RT "Evaluation of genes from eIF4E and eIF4G multigenic families as potential
RT candidates for partial resistance QTLs to Rice yellow mottle virus in
RT rice.";
RL Theor. Appl. Genet. 116:53-62(2007).
CC -!- FUNCTION: Plays a role in the accumulation of a sobemovirus (RYMV)
CC during viral infection. {ECO:0000250}.
CC -!- SUBUNIT: EIF4F is a multi-subunit complex, the composition of which
CC varies with external and internal environmental conditions. It is
CC composed of at least EIF4A, EIF4E and EIF4G. In higher plants two
CC isoforms of EIF4F have been identified, named isoform EIF4F and isoform
CC EIF(iso)4F. Isoform EIF4F has subunits p220 and p26, whereas isoform
CC EIF(iso)4F has subunits p82 and p28.
CC -!- SIMILARITY: Belongs to the eukaryotic initiation factor 4G family.
CC {ECO:0000305}.
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DR EMBL; AP005286; BAD19680.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF09321.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS79722.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ23786.1; -; Genomic_DNA.
DR EMBL; AK072083; BAG92814.1; -; mRNA.
DR RefSeq; XP_015624699.1; XM_015769213.1.
DR AlphaFoldDB; Q6K641; -.
DR SMR; Q6K641; -.
DR STRING; 4530.OS02T0611500-01; -.
DR iPTMnet; Q6K641; -.
DR PaxDb; Q6K641; -.
DR PRIDE; Q6K641; -.
DR EnsemblPlants; Os02t0611500-01; Os02t0611500-01; Os02g0611500.
DR GeneID; 4329958; -.
DR Gramene; Os02t0611500-01; Os02t0611500-01; Os02g0611500.
DR KEGG; osa:4329958; -.
DR eggNOG; KOG0401; Eukaryota.
DR HOGENOM; CLU_021872_0_0_1; -.
DR InParanoid; Q6K641; -.
DR OMA; HNRYSEP; -.
DR OrthoDB; 594395at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6K641; OS.
DR GO; GO:0016281; C:eukaryotic translation initiation factor 4F complex; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0003743; F:translation initiation factor activity; IBA:GO_Central.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR045208; IF4G.
DR InterPro; IPR003891; Initiation_fac_eIF4g_MI.
DR InterPro; IPR003890; MIF4G-like_typ-3.
DR PANTHER; PTHR23253; PTHR23253; 1.
DR Pfam; PF02847; MA3; 1.
DR Pfam; PF02854; MIF4G; 1.
DR SMART; SM00544; MA3; 1.
DR SMART; SM00543; MIF4G; 1.
DR SUPFAM; SSF48371; SSF48371; 2.
DR PROSITE; PS51366; MI; 1.
PE 2: Evidence at transcript level;
KW Initiation factor; Protein biosynthesis; Reference proteome;
KW Translation regulation.
FT CHAIN 1..780
FT /note="Eukaryotic translation initiation factor isoform 4G-
FT 2"
FT /id="PRO_0000420546"
FT DOMAIN 208..432
FT /note="MIF4G"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00698"
FT DOMAIN 612..734
FT /note="MI"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00698"
FT REGION 457..482
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 506..549
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 535..549
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 780 AA; 85989 MW; 1C25ACB6B620C907 CRC64;
MTQADQAVIS LRPGGGGGIG GPRAGRLFPF GASTGSLDFL RPRGGASSGF AAKLGDLRFE
PLERVRYTRD QLVELHEIID IPENILKLKQ DIDIELHGED EPWINNDSSV QTQSYNRYAE
TDNRDWRSRI EQPVQTPAIG GEEKSWDKFR EAKESYISSG KQDQFNNQDK LSSQFSAKAQ
VGPAPALVKA EVPWSIQRGN LSNKERVLKT VKGILNKLTP EKFDLLKGQL IEAGITTADI
LKDVISLIFE KAVLEPTFCP MYAQLCFDLN EKLPSFPSEE PGGKEITFKR VLLNNCQEAF
EGADNLRSEV NKLTGLDQEM ERRDKERLVK LRTLGNIRLV GELLKQKMVP EKIVHHIVQE
LLGSESNRCP AEENVEAICQ FFNTIGKQLD ENPKSRRFND VYFNRLKDLT TNSQLASRLR
FMARDVLDLR SNQWVPRREE MKAKKISEIH REAENNLGLR PGSTASIRTG RTGTGGGGPL
SPGAFSMNQP GIVGMLPGMP GARKMPGMPG LGSDDWEVPH SRSKPRADPV RNLTPSLANK
PSPNNSRLLP QGSAALISGK TSALVGSGGP LSHGLVVTPS QTTGPPKSLI PAPSVDPIVE
QPAAAPKPSS TELQKKTISL LKEYFHILLL HEAQQCIEEL KSPDYYPEVV KEAINLALDK
GTNSIDPLLR LLEHLYNKNV FKATDLETGC LLYSSLLDEL AIDLPKAPVH FGEVIGRLVL
SHCLSIEVVE DTLKKIEDSF FRAAVFEAMM KIMKANPSGQ AILGSHVAKI DACSKLLSSE
