IFRD1_RAT
ID IFRD1_RAT Reviewed; 449 AA.
AC P20695;
DT 01-FEB-1991, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-1991, sequence version 1.
DT 25-MAY-2022, entry version 105.
DE RecName: Full=Interferon-related developmental regulator 1;
DE AltName: Full=IRPR;
DE AltName: Full=Nerve growth factor-inducible protein PC4;
GN Name=Ifrd1; Synonyms=Pc4;
OS Rattus norvegicus (Rat).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Rattus.
OX NCBI_TaxID=10116;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=2467301; DOI=10.1073/pnas.86.6.2088;
RA Tirone F., Shooter E.M.;
RT "Early gene regulation by nerve growth factor in PC12 cells: induction of
RT an interferon-related gene.";
RL Proc. Natl. Acad. Sci. U.S.A. 86:2088-2092(1989).
RN [2]
RP SUBCELLULAR LOCATION.
RX PubMed=8028043; DOI=10.1002/jnr.490370514;
RA Guardavaccaro D., Montagnoli A., Ciotti M.T., Gatti A., Lotti L.,
RA di Lazzaro C., Torrisi M.R., Tirone F.;
RT "Nerve growth factor regulates the subcellular localization of the nerve
RT growth factor-inducible protein PC4 in PC12 cells.";
RL J. Neurosci. Res. 37:660-674(1994).
CC -!- FUNCTION: Probably participates in neurogenesis. Could play a role in
CC regulating gene activity in the proliferative and/or differentiative
CC pathways induced by NGF.
CC -!- SUBUNIT: Interacts with PSIP1/LEDGF. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:8028043}. Cell
CC membrane {ECO:0000269|PubMed:8028043}. Nucleus
CC {ECO:0000269|PubMed:8028043}. Note=Presents a NGF-dependent pattern of
CC intracellular localization. With increasing amounts of NGF and besides
CC being expressed in the cytoplasm, it is also localized in the plasma
CC membrane (inner side) at the onset of NGF-induced differentiation, from
CC where it disappears to reappear in the nuclei of differentiated cells.
CC -!- TISSUE SPECIFICITY: Expressed at high levels in the embryonic brain in
CC the period related to neuroblast proliferation and differentiation.
CC -!- DEVELOPMENTAL STAGE: Activated at the onset of neuronal
CC differentiation.
CC -!- INDUCTION: By nerve growth factor.
CC -!- SIMILARITY: Belongs to the IFRD family. {ECO:0000305}.
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DR EMBL; J04511; AAC28946.1; -; mRNA.
DR PIR; A30303; A30303.
DR RefSeq; NP_062115.1; NM_019242.1.
DR AlphaFoldDB; P20695; -.
DR SMR; P20695; -.
DR STRING; 10116.ENSRNOP00000067730; -.
DR PaxDb; P20695; -.
DR PRIDE; P20695; -.
DR GeneID; 29596; -.
DR KEGG; rno:29596; -.
DR CTD; 3475; -.
DR RGD; 2867; Ifrd1.
DR eggNOG; KOG2842; Eukaryota.
DR InParanoid; P20695; -.
DR OrthoDB; 1153292at2759; -.
DR PhylomeDB; P20695; -.
DR PRO; PR:P20695; -.
DR Proteomes; UP000002494; Unplaced.
DR GO; GO:0005737; C:cytoplasm; ISO:RGD.
DR GO; GO:0005634; C:nucleus; ISO:RGD.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0061629; F:RNA polymerase II-specific DNA-binding transcription factor binding; IPI:MGI.
DR GO; GO:0014009; P:glial cell proliferation; IEP:RGD.
DR GO; GO:0042692; P:muscle cell differentiation; ISO:RGD.
DR GO; GO:0030517; P:negative regulation of axon extension; ISO:RGD.
DR GO; GO:0048671; P:negative regulation of collateral sprouting; ISO:RGD.
DR GO; GO:0007405; P:neuroblast proliferation; IEP:RGD.
DR GO; GO:0051091; P:positive regulation of DNA-binding transcription factor activity; IGI:MGI.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IGI:MGI.
DR GO; GO:0043403; P:skeletal muscle tissue regeneration; ISO:RGD.
DR GO; GO:0014706; P:striated muscle tissue development; ISO:RGD.
DR Gene3D; 1.25.10.10; -; 1.
DR InterPro; IPR011989; ARM-like.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR039777; IFRD.
DR InterPro; IPR006921; Interferon-rel_develop_reg_C.
DR InterPro; IPR007701; Interferon-rel_develop_reg_N.
DR PANTHER; PTHR12354; PTHR12354; 1.
DR Pfam; PF05004; IFRD; 1.
DR Pfam; PF04836; IFRD_C; 1.
DR SUPFAM; SSF48371; SSF48371; 1.
PE 2: Evidence at transcript level;
KW Cell membrane; Cytoplasm; Developmental protein; Differentiation; Membrane;
KW Neurogenesis; Nucleus; Reference proteome.
FT CHAIN 1..449
FT /note="Interferon-related developmental regulator 1"
FT /id="PRO_0000153288"
FT REGION 1..41
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 22..41
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 449 AA; 49783 MW; E1385CC622942219 CRC64;
MPKNKKRNAP HRGGGGGGGS GAATSAATTG GPHRTVQPFS DEDASIETMS HCSGYSDPSS
FAEDGPEVLD EEGTQEDLEY KLKGLIDLTL DKSAKTRQAA LEGVKNALSS KVLYEFVLER
RMTLTDSIER CLKKGKSDGQ RAAAALASVL CIQLGPGLES EEILKTLGPI LKKIICDGTA
SIQARQTCAT CFGVCCFIAT DDITELYSTL ECLEGIFTKS YLKEKDTNVP CSTPNTVLHI
SSLLAWTLLL TICPISEVKK KLELHFHKLP SLLSCDDVNM RIAAGESLAL LFELARGMES
DFFYEDMDSL TQMLRALATD GNKHRAKVDK RKQRSVFRDV LRAVEERDFP TETVKFGPER
MYIDSWVKKH TYDTFKEALG SGMQYHLQTN EFLRNVFELG PPVMLDAATL KTMKIPRFER
HLYNSAAFKA RTKARSKCRD KRADVGEFF